SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19775

Length: 2521 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene19775
CGTCGTGACCTTGGCTGTCACTCAATGGAGAGGCTCTGGGGTGAGAACTTTTTTGATCCAGCTACAAAGAAATGGACAACCAAGAATACAGGTTCTGCAACTTGCAAAAGAGGATTTGTTCAATTCGTTGTGACCTTTTCTGTCACTTAAATATTTGTATGAATGATCAAAAGGATAAGTTGTGGCCCATGTTGCAGAAATTGGGAGTTGTAATGAAAAGTGACGAGAAGGAGCTGGTTGCAAAAGCACTCATGAAGCGTGTCATGCAAACCTGGCTACCTGCAAGTAGTGCTTTACTTGAAATGATGATTTTCCATCTTCCTTCTCCAGCGAAGGCACAGAGATATCGTGTGGAAAACTTGTATGAAGGACCTCTTGATGATATATATGCAACTGCAATAAGAAATTGTGACCCTGAGGGTCCACTGATGTTGTATGTTTCAAAAATGATTCCAGCTTCGGACAAAGGACGTTTCTTTGCCTTTGGTCGTGTTTTTGCTGGGAGAGTTGCAACAGGTATGAAGGTAAGGATCATGGGTCCCAACTATGTGCCAGGTCAGAAGAAAGATTTATATACAAAGAGTGTTCAAAGGACTGTGATATGGATGGGAAAGAAACAAGAATCTGTTGAGGATGTGCCTTGTGGAAATACAGTGGCTTTGGTTGGGTTAGACCAGTTCATAACAAAAAATGCTACACTGACAAACGAGAAGGAGGTTGATGCTCATCCGATCAGAGCAATGAAGTTCTCTGTGTCCCCTGTTGTACGTGTTGCTGTGCAGTGCAAGGTGGCATCTGACCTTCCAAAACTTGTTGAAGGGCTGAAGCGTCTTGCTAAGTCGGATCCTATGGTGGTTTGTACAATTGAGGAATCTGGAGAACATATTATTGCAGGTGCAGGAGAGCTTCATCTTGAGATTTGCTTAAAAGATCTCCAAGAAGATTTTATGGGTGGAGCTGAGATTGTTGTTTCTGATCCTGTTGTCTCATTTAGAGAAACTGTTTTGGAGAAATCATGCCGTACTGTTATGAGCAAGTCTCCAAATAAACATAACAGGCTTTACTTTGAAGCAAGACCTTTAGAAGAAGGTCTTGCAGAAGCAATTGATGAAGGTCGTATTGGCCCGAAGGATGATCCAAAGGCTCGCTCAAAAATTCTTTCTGAGGAATTTGGATGGGACAAAGATTTGGCTAAGAAGATCTGGTGTTTTGGACCTGAAACCACTGGTCCCAATATGGTGGTGGATATGTGTAAGGGAGTTCAATACTTGAATGAAATTAAAGATTCTGTGGTTGCTGCATTCCAATGGGCATCCAAGGAAGGTGCTCTTGCAGAAGAAAACATGCGTGGTATTTGCTTTGAGGTTTGTGACGTGGTTTTACACACTGATGCTATCCATAGAGGAGGTGGCCAGGTTATCCCAACGGCCAGAAGGGTCATGTATGCATCTCAGCTTACTGCCAAACCGCGGCTTCTTGAACCAGTGTATCTTGTTGAGATTCAGGCTCCTGAGAATGCCCTTGGTGGTATTTATGGTGTGCTGAACCAGAAGAGAGGTCATGTTTTTGAAGAAATGCAGAGGCCAGGTACTCCACTATACAACATCAAGGCATATCTGCCGGTTGTTGAATCATTCGGATTCTCAAGCACTCTCCGCGCTGCAACTTCCGGCCAGGCTTTTCCTCAATGTGTGTTTGACCACTGGGATATGATGGGCTCTGATCCATTGGAATCTGGGTCACAAGCTGGTCAGCTTGTGATCGATATACGTAAGAGGAAGGGTCTTAAGGAGAGTATGACTCCCTTGTCAGAGTACGAAGACAAGCTGTAGAGCTTTGTTATGTTTGCCTGCCGGATGCTGTCAATATTGAGGATAGTATTTTTATTTATAGTAGGATCAGAAATCATTAAAGCTGCCATTTCTTTTCGCTACCTATTGAATCTCAAAGGGAGACCCGACTTCCCAGGCTTCACTAAGTATGAAAAGGCAATTGTTTCAACCATCTTGTAGGCAGGACTTCAAAATTCAAACTGAGTATGAAAAGGCAATTGTTTGAGCCATCTTGCTGTCAGGACATTAAAATTCAGCGAATAAATTGAAGTTGCCCATAGATTGTTTAATAGATCCAAAATGTTTAGTTCAAATTTTTAATTGATACTTGCGAGGCTGTTGAGTGCTTGATCTGGCCTGCCTTTTTAATCATTGTACTTTCTATTTCATTTTTTGCACCGTACGATTAAGCTCCATGGATCAATTGATTGCTGTATTGAGAATCGAAGGGTAATGCCATTTCAAGAATCCCATCGAATCTTCTCTCTGACATCGTTTGTCTCTTTGAATGTAAATCCTATTTGTCCTGACCACATCTGAATATTTTTTATATTATGACATGTGATTCATAACCCTTCATGTTATGTTTGAACCATAATTGAATCATCCTCCAAACCTCTGCTAGGGGAGCAGTTTCCTTGAATTTGAAATGAGATCCCGACGACTAATAAAGATAATTTTAGAAAAGT

Ace file of the UniGene sp_v1.1_unigene19775

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cl2727_2b; LOC100285098; K03234 elongation factor EF-2 [EC:3.6.5.3]	-	-	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	95%

Source	ECs	Term	Type	Identity
Blast2go	Heterotrimeric G-protein GTPase.	EC:3.6.5.1	-	95%
Blast2go	Small monomeric GTPase.	EC:3.6.5.2	-	95%
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	95%
Blast2go	Signal-recognition-particle GTPase.	EC:3.6.5.4	-	95%

Source	ECs	Term	Type	e value	Identity
AutoFact	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	90%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	95%
Blast2go	translation elongation factor activity	GO:0003746	Molecular Function	95%
Blast2go	GTP binding	GO:0005525	Molecular Function	95%
Blast2go	copper ion binding	GO:0005507	Molecular Function	95%
Blast2go	GTPase activity	GO:0003924	Molecular Function	95%
Blast2go	plasma membrane	GO:0005886	Cellular Component	95%
Blast2go	chloroplast	GO:0009507	Cellular Component	95%
Blast2go	cytosol	GO:0005829	Cellular Component	95%

Source	InterPros	Term	Type	Identity
Blast2go	Translation elongation factor EFG/EF2, C-terminal	IPR000640	-	95%
Blast2go	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	95%
Blast2go	Translation elongation factor EFG/EF2, domain IV	IPR005517	-	95%
Blast2go	Translation elongation/initiation factor/Ribosomal, beta-barrel	IPR009000	-	95%
Blast2go	Elongation factor G/III/V	IPR009022	-	95%
Blast2go	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	95%
Blast2go	Ribosomal protein S5 domain 2-type fold	IPR020568	-	95%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACX5

Fln msg: your sequence is longer than subject: 587 - 267

Fln protein: MDNQEYRFCNLQKRICSIRCDLFCHLNICMNDQKDKLWPMLQKLGVVMKSDEKELVAKALMKRVMQTWLPASSALLEMMIFHLPSPAKAQRYRVENLYEGPLDDIYATAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFAGRVATGMKVRIMGPNYVPGQKKDLYTKSVQRTVIWMGKKQESVEDVPCGNTVALVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIIAGAGELHLEICLKDLQEDFMGGAEIVVSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYFEARPLEEGLAEAIDEGRIGPKDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAAFQWASKEGALAEENMRGICFEVCDVVLHTDAIHRGGGQVIPTARRVMYASQLTAKPRLLEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMGSDPLESGSQAGQLVIDIRKRKGLKESMTPLSEYEDKL*

Protein Length: 588

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGGAGAGGCTCTGGGGTGAGAACTTTTTTGATCCAGCTACAAAGAA_-_ATGGACAACCAAGAATACAGGTTCTGCAACTTGCAAAAGAGGATTTGTTCAATTCGTTGTGACCTTTTCTGTCACTTAAATATTTGTATGAATGATCAAAAGGATAAGTTGTGGCCCATGTTGCAGAAATTGGGAGTTGTAATGAAAAGTGACGAGAAGGAGCTGGTTGCAAAAGCACTCATGAAGCGTGTCATGCAAACCTGGCTACCTGCAAGTAGTGCTTTACTTGAAATGATGATTTTCCATCTTCCTTCTCCAGCGAAGGCACAGAGATATCGTGTGGAAAACTTGTATGAAGGACCTCTTGATGATATATATGCAACTGCAATAAGAAATTGTGACCCTGAGGGTCCACTGATGTTGTATGTTTCAAAAATGATTCCAGCTTCGGACAAAGGACGTTTCTTTGCCTTTGGTCGTGTTTTTGCTGGGAGAGTTGCAACAGGTATGAAGGTAAGGATCATGGGTCCCAACTATGTGCCAGGTCAGAAGAAAGATTTATATACAAAGAGTGTTCAAAGGACTGTGATATGGATGGGAAAGAAACAAGAATCTGTTGAGGATGTGCCTTGTGGAAATACAGTGGCTTTGGTTGGGTTAGACCAGTTCATAACAAAAAATGCTACACTGACAAACGAGAAGGAGGTTGATGCTCATCCGATCAGAGCAATGAAGTTCTCTGTGTCCCCTGTTGTACGTGTTGCTGTGCAGTGCAAGGTGGCATCTGACCTTCCAAAACTTGTTGAAGGGCTGAAGCGTCTTGCTAAGTCGGATCCTATGGTGGTTTGTACAATTGAGGAATCTGGAGAACATATTATTGCAGGTGCAGGAGAGCTTCATCTTGAGATTTGCTTAAAAGATCTCCAAGAAGATTTTATGGGTGGAGCTGAGATTGTTGTTTCTGATCCTGTTGTCTCATTTAGAGAAACTGTTTTGGAGAAATCATGCCGTACTGTTATGAGCAAGTCTCCAAATAAACATAACAGGCTTTACTTTGAAGCAAGACCTTTAGAAGAAGGTCTTGCAGAAGCAATTGATGAAGGTCGTATTGGCCCGAAGGATGATCCAAAGGCTCGCTCAAAAATTCTTTCTGAGGAATTTGGATGGGACAAAGATTTGGCTAAGAAGATCTGGTGTTTTGGACCTGAAACCACTGGTCCCAATATGGTGGTGGATATGTGTAAGGGAGTTCAATACTTGAATGAAATTAAAGATTCTGTGGTTGCTGCATTCCAATGGGCATCCAAGGAAGGTGCTCTTGCAGAAGAAAACATGCGTGGTATTTGCTTTGAGGTTTGTGACGTGGTTTTACACACTGATGCTATCCATAGAGGAGGTGGCCAGGTTATCCCAACGGCCAGAAGGGTCATGTATGCATCTCAGCTTACTGCCAAACCGCGGCTTCTTGAACCAGTGTATCTTGTTGAGATTCAGGCTCCTGAGAATGCCCTTGGTGGTATTTATGGTGTGCTGAACCAGAAGAGAGGTCATGTTTTTGAAGAAATGCAGAGGCCAGGTACTCCACTATACAACATCAAGGCATATCTGCCGGTTGTTGAATCATTCGGATTCTCAAGCACTCTCCGCGCTGCAACTTCCGGCCAGGCTTTTCCTCAATGTGTGTTTGACCACTGGGATATGATGGGCTCTGATCCATTGGAATCTGGGTCACAAGCTGGTCAGCTTGTGATCGATATACGTAAGAGGAAGGGTCTTAAGGAGAGTATGACTCCCTTGTCAGAGTACGAAGACAAGCTGTAG___AGCTTTGTTATGTTTGCCTGCCGGATGCTGTCAATATTGAGGATAGTATTTTTATTTATAGTAGGATCAGAAATCATTAAAGCTGCCATTTCTTTTCGCTACCTATTGAATCTCAAAGGGAGACCCGACTTCCCAGGCTTCACTAAGTATGAAAAGGCAATTGTTTCAACCATCTTGTAGGCAGGACTTCAAAATTCAAACTGAGTATGAAAAGGCAATTGTTTGAGCCATCTTGCTGTCAGGACATTAAAATTCAGCGAATAAATTGAAGTTGCCCATAGATTGTTTAATAGATCCAAAATGTTTAGTTCAAATTTTTAATTGATACTTGCGAGGCTGTTGAGTGCTTGATCTGGCCTGCCTTTTTAATCATTGTACTTTCTATTTCATTTTTTGCACCGTACGATTAAGCTCCATGGATCAATTGATTGCTGTATTGAGAATCGAAGGGTAATGCCATTTCAAGAATCCCATCGAATCTTCTCTCTGACATCGTTTGTCTCTTTGAATGTAAATCCTATTTGTCCTGACCACATCTGAATATTTTTTATATTATGACATGTGATTCATAACCCTTCATGTTATGTTTGAACCATAATTGAATCATCCTCCAAACCTCTGCTAGGGGAGCAGTTTCCTTGAATTTGAAATGAGATCCCGACGACTAATAAAGATAATTTTAGAAAAGT

Fln Alignment:

sp_v1.1_unigene19775___MSKSPNKHNRLYFEARPLEEGLAEAIDEGRIGPKDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAAFQWASKEGALAEENMRGICFEVCDVVLHTDAIHRGGGQVIPTARRVMYASQLTAKPRLLEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMGSDPLESGSQAGQLVIDIRKRKGLKESMTPLSEYEDKL
D5ACX5_______________MSKSPNKHNRLYFEARPLEEGLAEAIDDGRIGPKDDPKARAKILSEEFGWDKDLAKKIWCFGPETTGPNLVVDMCKGVQYLNEIKDSVVAAFQWASKEGALAEENMRGICFEVCDVVLHTDAIHRGGGQIIPTARRVMYASQLTAKPRLLEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRQGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMGSDPLETGSQAGQLVTDIRKRKGLKESMTPLSDFEDKL

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
194		33		66	0.997452
197		33		66	0.997452
200	66			33	0.997452
203	66	33			0.997452
204	66	33			0.997452
209		33	66		0.997452
210	66			33	0.997452
214	33			66	0.997452
215		33	66		0.997452
2186		11		88	0.923564
2312			42	57	1.0
2328	83		16		0.994512
2409	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain