SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19728

Length: 413 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene19728
CGTCGTGACCTTGGCTGTCACTCAGCTTCTTTGGTTTATTCTCTGTAATTTCTTGCTTGCTATCCTCTGCAATGGAGAAATACAGACAAGAAATGCCTGGCTCAGTTCTAGTATTTATATTACTGCTCTTGATGTCATTAACCTTGTCATGCCGAGGCAAAAACGCAGAATGTGCAGAAGCAGATCGGGCTGCCTTATTAGATTTCAAAGCTGGCATCATTGAAGATACCACTGGAGTCCTTGAATCATGGACGGGCAACAATTGCTGCTGCCAATGGAACGGTGTGCTGTGCGACACCCACAGCAATCGAGTGGTAAGCTTCATTCTCCACGCAGATCCACACAACAGCAGCGAGCACATGAGTGGAACTATATCAGAGTCCATCGGTAATCTTTCTTATCTTAAGAAACTT

Ace file of the UniGene sp_v1.1_unigene19728

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	disease resistance family protein / LRR family protein [Arabidopsis thaliana] dbj\|BAB09556.1\| disease resistance protein-like [Arabidopsis thaliana] gb\|AAM13082.1\| unknown protein [Arabidopsis thaliana] gb\|AAO29978.1\| unknown protein [Arabidopsis thaliana	-	-	3.0e-14	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	serine-threonine protein plant-	-	-	3.66551e-16	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	signal transduction	GO:0007165	Biological Process	3.66551e-16	63%
Blast2go	catalytic activity	GO:0003824	Molecular Function	3.66551e-16	63%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	3.66551e-16	63%
Blast2go	cell wall	GO:0005618	Cellular Component	3.66551e-16	63%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS28

Fln msg: Distance to subject end: 481 aas, your sequence is shorter than subject: 114 - 610

Fln protein: MEKYRQEMPGSVLVFILLLLMSLTLSCRGKNAECAEADRAALLDFKAGIIEDTTGVLESWTGNNCCCQWNGVLCDTHSNRVVSFILHADPHNSSEHMSGTISESIGNLSYLKKL

Protein Length: 115

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTCTTTGGTTTATTCTCTGTAATTTCTTGCTTGCTATCCTCTGCA_-_ATGGAGAAATACAGACAAGAAATGCCTGGCTCAGTTCTAGTATTTATATTACTGCTCTTGATGTCATTAACCTTGTCATGCCGAGGCAAAAACGCAGAATGTGCAGAAGCAGATCGGGCTGCCTTATTAGATTTCAAAGCTGGCATCATTGAAGATACCACTGGAGTCCTTGAATCATGGACGGGCAACAATTGCTGCTGCCAATGGAACGGTGTGCTGTGCGACACCCACAGCAATCGAGTGGTAAGCTTCATTCTCCACGCAGATCCACACAACAGCAGCGAGCACATGAGTGGAACTATATCAGAGTCCATCGGTAATCTTTCTTATCTTAAGAAACTT

Fln Alignment:

sp_v1.1_unigene19728___AECAEADRAALLDFKAGIIEDTTGVLESWTGNNCCC--QWNGVLCDTHSNRVVSFIL-HADPHNSSEHMSGTISESIGNLSYLKKL
B8LS28_______________ATCFLKDKEALLSFKAAIPEDTTGTLITWTPGTDCCGGGWAGIQCDARSGRVTQLVLQNPEETNDTMYMRGTVSPSLGNLKSLQIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain