SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19679

Length: 781 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene19679 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	oxidoreductase, 2OG-Fe(II) oxygenase family protein (EC:1.14.11.9)	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	fe ascorbate oxidase	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on paired donors, with incorporation or reduction of molecular oxygen, With 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors.	EC:1.14.11.-	-	0.0	74%

Source	KEGGs	Term	Identity
Blast2go	Glycine, serine and threonine metabolism	00260	74%
Blast2go	Benzoxazinoid biosynthesis	00402	74%
Blast2go	Diterpenoid biosynthesis	00904	74%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	74%
Blast2go	secondary metabolic process	GO:0019748	Biological Process	74%
Blast2go	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	GO:0016706	Molecular Function	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	74%

Full-Lengther Next Prediction

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
355			80	20	0.995493
358		20		80	0.995493
361			80	20	0.995493
369		80	20		0.995493
375	80	20			0.995493
385		80	20		0.995493
394	75			25	0.996473
409	75			25	0.996473
425	83		16		0.994512
434		33	66		1.0
440		50		50	1.0
443		50		50	1.0
461		50		50	1.0
468		16		83	0.994512
475	33	16		50	1.0
479			50	50	1.0
487		83		16	0.994512
488		83		16	0.994512
489			16	83	0.994512
496		50		50	1.0
498		66		33	1.0
500	83		16		0.994512
501	83	16			0.994512
502			50	50	1.0
512			50	50	1.0
522		83		16	0.994512
533		83	16		0.994512
537	50		50		1.0
569	80		20		0.995493
571		20		80	0.995493
584	40		60		1.0
589		60		40	1.0
599	60	40			1.0
611			20	80	0.995493
625		40		60	1.0
628		40	60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain