SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19671

Length: 2242 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene19671
CGTCGTGACCTTGGCTGTCACTCATCTCGCGCCGTCTTCGTGCCCTTGGCGTCACTCATCCTTCCTCCTCAGCCCTTCTTCAATCCATGGGACGCTCCGCCTCCCCCGGTTCCGCCTCCAGCAGACGCAGATTTGCAGAAACGCATTGATAAATTGGCCGAATACGCCGCTAAGAATGGCCCTGATTTCGAAAAAATGATCAGGGAAAAGCAGCAGGACAACCCTGCTTACAACTTCCTCTTTGGGGCCGAAGGCCACGGGTATTACAGATACAAGCTCTGGCTATGCACTCGCCCAATCACTGCTAACTTCAGCCATGGTATGGGTAGCATGAATCCGGGTTTGACATCCATGGGTTCTTTGAATTCTCCACTGCAAACCCTCAATCCTCCCCTAAACCCTGGATTGAGCTCGGCTTTGAACCCTGTTCTGAGCAATTCACTATTGGGTGCAGCACCGCCTCTTCATCATTCTGGGCCGTTTCCTGCATTCTATGATCAGCATCCGCAGCCGCCGCCGCAGCATTCTCAGCCCCTTTACTCTCAATCTCGCTCGGATTACGAGCCCATGACAAGGTCATTCAAAGGGCTTTCTGGACCGCTTCCTTCTGATGTTGCGGCCGAGCTTTATAACGTGCTCAACAATCTTACAGGGACGAAGGAGTCAATTAAGGGCGCGAAGACCTGGTTTATGCAGAGGTCCCCATTTGCGCCGGCTCTAGCGGAGGCTTTGAAGGATAGGGTTATGGCTCTGGACGATGCCGAAAAACAGTTGCATATCATCTATTTGGCAAATGACATCCTTTTTGACAGTTTGCAGCGTCGTATCAATCCAAAGGAGCTAGACAACGAGGCTCTTGCTTTTCAGCCTGTATTGGGAAACATGCTTGCGAGGATTTATCACAATCCTCAAAACAAAGATGCAAATCAATCACGTCTGCAAAAGATACTACAGTTTTGGGCTTCCAAGGAAGTTTATGATACTGAAACTATCTATAGTTTAGAAGGTGATATGTTAGCTGGCCCACCGGCTCCAGCTGGATCTGTAAAAGAGTCTTCTCTACAAGAGCCGTCTGTTGGTTCGTCAGGAATCTTACAATCATCCACCCAAAATCCTCCTCAATGGCCATTGGATTTACAAAGAAACTCCCAGCCATCAACAGAACAGGAACAGCAAGATAAAGCTATACCGCCTGTTTCAACATCACAATTCTTTGGATCAAGTACACAGTTTAATTCAACAGCATCTCAGATCTTTGCAACCAATACAGTTTCCTCTATGCAATATCCATCAATGGCTCAGTCTTTTCATGGATCACTACCTACTCCTACCCCTGCAGCTTCTCAGTTGACTCCACAAGTGCCAAATCTATCTGCTGCTAGAGGTGGGGATCAGCCTCCATATCCATTGTTTCCTCCAGGGCTTATACCAGGAATGGTTCGAAAAATGCAAATAGGAAGTGGGGTTCCTTACTCTCCTTTGAGCCCTCTGGATATCCCTACAGTAATTCCTCCGTCTACATTATCTTCATCGTATATTCTTGAAAGAGTTTCAAAGTTTTTCAAAGAGATAGGTGAAGTCAATCCTTTAGAAAATCAGTCAACTTTATCTGACTCAATAGAGGATGATGAAAGGGAGCAGCCAAGCCGTACAGGTGGTGCTTGTATTCCACCTCCACCTAATTTGCAGGTTGATGCAGATACTGGTACACTTCCAGATGGAAGTGTTGAACACAAGCCAGGATCAACTAGTACAGGAAGGTTGGGTCTTGGAGCTACTGCTGATCCTAATGAAATGAGCCAGTATGATGATGTTTATTCTTCATACAGGAAGCAAAGGAGCTCAAGTTATCATACATCAATGAGTGCCAGAGCTTCAGCAAGATAGTTGAAGTTTATTATCCTTTTTACAGGTACTGGCATACTGCTTGTGTAATGCCAACAGTTTGTAGAAATTTTCGAAGTGCTCCATAACATCAATATTTTATTATTTTCTATAGAAACACTGGTTAACTTCACAGGTTGTAACAGTTATCCATCGTTACAAATGGATTATACAGTGCAAGACCTAAATTTTTCCTTTGAAACAGTTTTGTAGTAGGTTAAACAGAAAATTGCAAAATTTCTTAAATTTAAAATGATGAAGGATTTTGACAGATGAACATTATTCCATACGTAGTTGACTCGACTTCATGCTTTGTCTAAAAACGATTTGTTAGCATTTAAATAATTGAGTTGTCAAC

Ace file of the UniGene sp_v1.1_unigene19671

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SPT4_RICCO	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	61%
Blast2go	protein	-	-	66%

Source	InterPros	Term	Type	Identity
Blast2go	SWAP/Surp	IPR000061	-	66%
Blast2go	RNA polymerase II, large subunit, CTD	IPR006569	-	66%
Blast2go	RNA polymerase II-binding domain	IPR006903	-	66%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6H1T4

Fln msg: your sequence is shorter than subject: 629 - 692

Fln protein: RRDLGCHSSRAVFVPLASLILPPQPFFNPWDAPPPPVPPPADADLQKRIDKLAEYAAKNGPDFEKMIREKQQDNPAYNFLFGAEGHGYYRYKLWLCTRPITANFSHGMGSMNPGLTSMGSLNSPLQTLNPPLNPGLSSALNPVLSNSLLGAAPPLHHSGPFPAFYDQHPQPPPQHSQPLYSQSRSDYEPMTRSFKGLSGPLPSDVAAELYNVLNNLTGTKESIKGAKTWFMQRSPFAPALAEALKDRVMALDDAEKQLHIIYLANDILFDSLQRRINPKELDNEALAFQPVLGNMLARIYHNPQNKDANQSRLQKILQFWASKEVYDTETIYSLEGDMLAGPPAPAGSVKESSLQEPSVGSSGILQSSTQNPPQWPLDLQRNSQPSTEQEQQDKAIPPVSTSQFFGSSTQFNSTASQIFATNTVSSMQYPSMAQSFHGSLPTPTPAASQLTPQVPNLSAARGGDQPPYPLFPPGLIPGMVRKMQIGSGVPYSPLSPLDIPTVIPPSTLSSSYILERVSKFFKEIGEVNPLENQSTLSDSIEDDEREQPSRTGGACIPPPPNLQVDADTGTLPDGSVEHKPGSTSTGRLGLGATADPNEMSQYDDVYSSYRKQRSSSYHTSMSARASAR*

Protein Length: 630

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTCGCGCCGTCTTCGTGCCCTTGGCGTCACTCATCCTTCCTCCTCAGCCCTTCTTCAATCCATGGGACGCTCCGCCTCCCCCGGTTCCGCCTCCAGCAGACGCAGATTTGCAGAAACGCATTGATAAATTGGCCGAATACGCCGCTAAGAATGGCCCTGATTTCGAAAAAATGATCAGGGAAAAGCAGCAGGACAACCCTGCTTACAACTTCCTCTTTGGGGCCGAAGGCCACGGGTATTACAGATACAAGCTCTGGCTATGCACTCGCCCAATCACTGCTAACTTCAGCCATGGTATGGGTAGCATGAATCCGGGTTTGACATCCATGGGTTCTTTGAATTCTCCACTGCAAACCCTCAATCCTCCCCTAAACCCTGGATTGAGCTCGGCTTTGAACCCTGTTCTGAGCAATTCACTATTGGGTGCAGCACCGCCTCTTCATCATTCTGGGCCGTTTCCTGCATTCTATGATCAGCATCCGCAGCCGCCGCCGCAGCATTCTCAGCCCCTTTACTCTCAATCTCGCTCGGATTACGAGCCCATGACAAGGTCATTCAAAGGGCTTTCTGGACCGCTTCCTTCTGATGTTGCGGCCGAGCTTTATAACGTGCTCAACAATCTTACAGGGACGAAGGAGTCAATTAAGGGCGCGAAGACCTGGTTTATGCAGAGGTCCCCATTTGCGCCGGCTCTAGCGGAGGCTTTGAAGGATAGGGTTATGGCTCTGGACGATGCCGAAAAACAGTTGCATATCATCTATTTGGCAAATGACATCCTTTTTGACAGTTTGCAGCGTCGTATCAATCCAAAGGAGCTAGACAACGAGGCTCTTGCTTTTCAGCCTGTATTGGGAAACATGCTTGCGAGGATTTATCACAATCCTCAAAACAAAGATGCAAATCAATCACGTCTGCAAAAGATACTACAGTTTTGGGCTTCCAAGGAAGTTTATGATACTGAAACTATCTATAGTTTAGAAGGTGATATGTTAGCTGGCCCACCGGCTCCAGCTGGATCTGTAAAAGAGTCTTCTCTACAAGAGCCGTCTGTTGGTTCGTCAGGAATCTTACAATCATCCACCCAAAATCCTCCTCAATGGCCATTGGATTTACAAAGAAACTCCCAGCCATCAACAGAACAGGAACAGCAAGATAAAGCTATACCGCCTGTTTCAACATCACAATTCTTTGGATCAAGTACACAGTTTAATTCAACAGCATCTCAGATCTTTGCAACCAATACAGTTTCCTCTATGCAATATCCATCAATGGCTCAGTCTTTTCATGGATCACTACCTACTCCTACCCCTGCAGCTTCTCAGTTGACTCCACAAGTGCCAAATCTATCTGCTGCTAGAGGTGGGGATCAGCCTCCATATCCATTGTTTCCTCCAGGGCTTATACCAGGAATGGTTCGAAAAATGCAAATAGGAAGTGGGGTTCCTTACTCTCCTTTGAGCCCTCTGGATATCCCTACAGTAATTCCTCCGTCTACATTATCTTCATCGTATATTCTTGAAAGAGTTTCAAAGTTTTTCAAAGAGATAGGTGAAGTCAATCCTTTAGAAAATCAGTCAACTTTATCTGACTCAATAGAGGATGATGAAAGGGAGCAGCCAAGCCGTACAGGTGGTGCTTGTATTCCACCTCCACCTAATTTGCAGGTTGATGCAGATACTGGTACACTTCCAGATGGAAGTGTTGAACACAAGCCAGGATCAACTAGTACAGGAAGGTTGGGTCTTGGAGCTACTGCTGATCCTAATGAAATGAGCCAGTATGATGATGTTTATTCTTCATACAGGAAGCAAAGGAGCTCAAGTTATCATACATCAATGAGTGCCAGAGCTTCAGCAAGATAG___TTGAAGTTTATTATCCTTTTTACAGGTACTGGCATACTGCTTGTGTAATGCCAACAGTTTGTAGAAATTTTCGAAGTGCTCCATAACATCAATATTTTATTATTTTCTATAGAAACACTGGTTAACTTCACAGGTTGTAACAGTTATCCATCGTTACAAATGGATTATACAGTGCAAGACCTAAATTTTTCCTTTGAAACAGTTTTGTAGTAGGTTAAACAGAAAATTGCAAAATTTCTTAAATTTAAAATGATGAAGGATTTTGACAGATGAACATTATTCCATACGTAGTTGACTCGACTTCATGCTTTGTCTAAAAACGATTTGTTAGCATTTAAATAATTGAGTTGTCAAC

Fln Alignment:

sp_v1.1_unigene19671___LQKRIDKLAEYAAKNGPDFEKMIREKQQDNPAYNFLFGAEGHGYYRYKLWLCTRPITANFSHGMGSMNPGLTSMGSLNSPLQTLNPPLNPGLSS--ALNPVLSNSLLGAAPPLHHSGPFPAFYDXXXXXXXXXXXXXXXXXRSDYEPMTRSFKGLSGPLPSDVAAELYNVLNNLTGTKESIKGAKTWFMQRSPFAPALAEALKDRVMALDDAEKQLHIIYLANDILFDSLQRRINPKELDNEALAFQPVLGNMLARIYHNPQNKDANQSRLQKILQFWASKEVYDTETIYSLEGDMLAGPPAPAGSVKESSLQ----EPSVGSSGILQSSTQNPPQWPLDLQRNSQPSTEQEQQDKAIPPVXXXXXXXXXXXXXXXASQIFATNTVSSMQYPSMAQSFHGSLPTPT---PAASQLTPQVPNLSAARXXXXXXXXXXXXXXXXXMVRKMQIGSGVPYSPLSPLDIPTVIPPSTLSSSYILERVSKFFKEIGEVNPLENQSTLSDSIEDD---EREQPSRTGGACIPPPPNLQVDADTGTLPDGSVEHKPGSTSTGRLGLGATADPNEMSQYDDVXXXXXXXXXXXXHTSMSARASAR
F6H1T4_______________LHKRIDKLVEYAAKNGPEFEVMIREKQQDNPAYSFLFGGEGHNYYRYKLWLSTRSSGGPFNSPFPP-----SSIPMMHSPM---NPMMNPSLNAPPAAAAGASASMLGT--PQMHQPPYLPFYDQQQQQHQHPQPFLGHG-RPDFDPSSKSFKGLSGPLPSDVAMELSNVLNNLTGTKESIKGAKIWFMQRSPFAPALAEALRDRVFAVDDSERQLHIIYLANDILFDSLQRRINPHELDNEALAFKPVLGSMLARIYHNPQNKEENQSRLQKILQFWASKEVYDHDTIYGLEGEMIGGPPSNSFSGPHKELSAVPVDPS-AVSGLPQSAHHNIPHWQPEKPCSMPSLLEQEQPDKQMPSL--------AAMPPSLATQQFLPNAVP-------AGPFLGSMPIPSSVQPANQQPALHLPT-AAGLGEKLPPYPLFPPGLIPGMVRKMQIGSGVPYSPMSPLDIPTVIPPSNVSPSEILERVSKFFKEIGEVNPSEGPMEPSDSKDEDDEYERDSPVRKGGACIPPPPNLQVDPETGTYADGSVERKPGSSGSARLGLGATANPNEVSQYDDVYTSYRKQRSTNYHSSMSARAGTR

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
214	75		25		0.996473
215			75	25	0.996473
217	75		25		0.996473
218			75	25	0.996473
223	75			25	0.996473
224	75			25	0.996473
225		75	25		0.996473
226		75	25		0.996473
232	25			75	0.996473
233		25		75	0.996473
234	75			25	0.996473
854		75		25	1.0
890	12		87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain