SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19647

Length: 1997 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene19647
ATGGGGATAACAGAGCCCCCATTAACTTTGGGATGCAAGGGGTTAGTTTGAGGAGTTGGAGATCATATAAATGTCATGATAGTCAAACCCATTAGCTTGCGGTTGGTGTGTTGGGAAACTACCTTAGTCCGGGAATATTTCATTTTTTTCAAAAAGCTATATAGAGAAAGAGTAAAAAATTTCCTTTGGCGGTCATATAGCCTAAGTACAGCCATCGTCTCCTTCCATTCTCAAGCCTCTCGACTGTCCACGAGAGCCCAACTAGCGATCCTGCCTTCCAGGAGCCTTTACAGGGAGTAAAGGGATCTGTTTCCTCTGTGTTGCTCAATTCTATAATTTCGAGGAGCGTCGAGTGACTTGGGTCTCTGGTTTTGGGGGATTGGTGATGTGGGTTTCTCTTTGTTTTGTACATTAGTTGCTCTGCTCGTTGGTATGCTGAGGATCTGCGGTGCTTGAGGTCATTTGTATGATTTTTGTGCACCATAGGGCACTTGGACACTTCGAGCTTTGGGGATTCAAGATCCAGATCTGATAGCGTAAATTGATGGGCTGGAAGTGATTGGATCTGTGTGTAATTTTAGAGGTTGGGTAGGCATGGCACCTGCAAGCAAGGCAGACAGGAAGGCGGCCCTTGATGTGGCAGCATGGATGTTCAATGTCAGCACATCTGTTGGGATTATTATGGTTAACAAAGGTCTGATGGCTAGATATGGCTTCACTTTTGCTACTACATTGACAGGCTTACATTTTGCAATGACCACACTGATGACAATTATTCTTCGTTGTATGGGTTATATCCAACCTTCCCATTTACCTTTCTCCGAGCTTGCGAAATTTGTGATCTGTGCCAATTTTTCCATTGTTGGCATGAATGTCAGTCTCATGTGGAATTCTGTTGGTTTTTACCAGATAGCAAAGTTGAGCATGATACCTGTATCTTGCTTTTTTGAAGTTCTCTTTGACAAGATTCGTTATTCAAGAGATACCAAGTTAAGTATACTAGTAGTGCTAGTTGGTGTAGCAATATGTACTGTCACAGATGTCAGTGTCAATACTAAAGGTTTTGTAGCTGCTGCGATTGCAGTATGGAGCACTTCTATGCAACAATATTATGTTCACTACCTGCAGAAGAAATACGCACTGGGTTCTTTTGATCTTCTTGGACATACTGCGCCACTGCAAGCAGCTACCTTGCTCATTTTAGGTCCTTTTCTTGATTACTGGCTCGCAGAAAAAAGAGTGGATCTTTATGATTATTCCATAACTTCTGTGCTCTTCATTACACTCTCATGCGTGATCGCAGTTGGCACCAATCTTAGCCAATTCATCTGCATTGGTCGGTTCACAGCAGTCTCATTTCAAGTTCTTGGTCATATGAAGACTATCTTTGTCCTTGTATTGGGATTCATCTTTTTTGGCAAAGAAGGGTTAAATTCACAGGTGGTTTTGGGAATGTTCCTAGCTGTGATTGGAATGGTTTGGTATGGTAATGCATCTGGAAAGCCTGGCGGTAAAGAACGGCGTATGTATCCAATATCTAGTGAAAGGAACCTGAAACTTGGTGGATCTGAAGATGGAGGGCTTGACAAAGTTTAGCAGATTAGAATATGCTACTGCTTAAGTTGATTCTACACCTGATAACTGAGGTTTGCCCAATGATACACATTGCTTGTGGGATTCATTTGAGCTTCATTTATTGTTGTTATAGATATTTGTCCTGGTTGGCATTGCATTTAAGAGATTGCTGAGTAATGTGCCACGTGGTACAGTAACAATTTCTCCACAAATTTATTGTAAGAGCATGAATTTGTATACGGCTGCTACCCTTTCCAAGGTAGAGGAAGTACAACATAAAATCTTTAATTGGTCAGCCTTGCAGTTTTCTTTCATGCAAGCAAGGCTTCTACATCATCGTCTTTTGCTTGAAAAATACTCATTATTTATTGTATGTTTGTCACTTCTCAGTTAGTATTAGAGATTCGAGTCTCTTTTCTCAT

Ace file of the UniGene sp_v1.1_unigene19647

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transporter-related	-	-	78%
FL-Next	sp=UDP-galactose transporter 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	51%
Blast2go	protein	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	87%
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SRE4

Fln msg:

Fln protein: MAPASKADRKAALDVAAWMFNVSTSVGIIMVNKGLMARYGFTFATTLTGLHFAMTTLMTIILRCMGYIQPSHLPFSELAKFVICANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFFEVLFDKIRYSRDTKLSILVVLVGVAICTVTDVSVNTKGFVAAAIAVWSTSMQQYYVHYLQKKYALGSFDLLGHTAPLQAATLLILGPFLDYWLAEKRVDLYDYSITSVLFITLSCVIAVGTNLSQFICIGRFTAVSFQVLGHMKTIFVLVLGFIFFGKEGLNSQVVLGMFLAVIGMVWYGNASGKPGGKERRMYPISSERNLKLGGSEDGGLDKV*

Protein Length: 335

Fln nts: ATGGGGATAACAGAGCCCCCATTAACTTTGGGATGCAAGGGGTTAGTTTGAGGAGTTGGAGATCATATAAATGTCATGATAGTCAAACCCATTAGCTTGCGGTTGGTGTGTTGGGAAACTACCTTAGTCCGGGAATATTTCATTTTTTTCAAAAAGCTATATAGAGAAAGAGTAAAAAATTTCCTTTGGCGGTCATATAGCCTAAGTACAGCCATCGTCTCCTTCCATTCTCAAGCCTCTCGACTGTCCACGAGAGCCCAACTAGCGATCCTGCCTTCCAGGAGCCTTTACAGGGAGTAAAGGGATCTGTTTCCTCTGTGTTGCTCAATTCTATAATTTCGAGGAGCGTCGAGTGACTTGGGTCTCTGGTTTTGGGGGATTGGTGATGTGGGTTTCTCTTTGTTTTGTACATTAGTTGCTCTGCTCGTTGGTATGCTGAGGATCTGCGGTGCTTGAGGTCATTTGTATGATTTTTGTGCACCATAGGGCACTTGGACACTTCGAGCTTTGGGGATTCAAGATCCAGATCTGATAGCGTAAATTGATGGGCTGGAAGTGATTGGATCTGTGTGTAATTTTAGAGGTTGGGTAGGC_-_ATGGCACCTGCAAGCAAGGCAGACAGGAAGGCGGCCCTTGATGTGGCAGCATGGATGTTCAATGTCAGCACATCTGTTGGGATTATTATGGTTAACAAAGGTCTGATGGCTAGATATGGCTTCACTTTTGCTACTACATTGACAGGCTTACATTTTGCAATGACCACACTGATGACAATTATTCTTCGTTGTATGGGTTATATCCAACCTTCCCATTTACCTTTCTCCGAGCTTGCGAAATTTGTGATCTGTGCCAATTTTTCCATTGTTGGCATGAATGTCAGTCTCATGTGGAATTCTGTTGGTTTTTACCAGATAGCAAAGTTGAGCATGATACCTGTATCTTGCTTTTTTGAAGTTCTCTTTGACAAGATTCGTTATTCAAGAGATACCAAGTTAAGTATACTAGTAGTGCTAGTTGGTGTAGCAATATGTACTGTCACAGATGTCAGTGTCAATACTAAAGGTTTTGTAGCTGCTGCGATTGCAGTATGGAGCACTTCTATGCAACAATATTATGTTCACTACCTGCAGAAGAAATACGCACTGGGTTCTTTTGATCTTCTTGGACATACTGCGCCACTGCAAGCAGCTACCTTGCTCATTTTAGGTCCTTTTCTTGATTACTGGCTCGCAGAAAAAAGAGTGGATCTTTATGATTATTCCATAACTTCTGTGCTCTTCATTACACTCTCATGCGTGATCGCAGTTGGCACCAATCTTAGCCAATTCATCTGCATTGGTCGGTTCACAGCAGTCTCATTTCAAGTTCTTGGTCATATGAAGACTATCTTTGTCCTTGTATTGGGATTCATCTTTTTTGGCAAAGAAGGGTTAAATTCACAGGTGGTTTTGGGAATGTTCCTAGCTGTGATTGGAATGGTTTGGTATGGTAATGCATCTGGAAAGCCTGGCGGTAAAGAACGGCGTATGTATCCAATATCTAGTGAAAGGAACCTGAAACTTGGTGGATCTGAAGATGGAGGGCTTGACAAAGTTTAG___CAGATTAGAATATGCTACTGCTTAAGTTGATTCTACACCTGATAACTGAGGTTTGCCCAATGATACACATTGCTTGTGGGATTCATTTGAGCTTCATTTATTGTTGTTATAGATATTTGTCCTGGTTGGCATTGCATTTAAGAGATTGCTGAGTAATGTGCCACGTGGTACAGTAACAATTTCTCCACAAATTTATTGTAAGAGCATGAATTTGTATACGGCTGCTACCCTTTCCAAGGTAGAGGAAGTACAACATAAAATCTTTAATTGGTCAGCCTTGCAGTTTTCTTTCATGCAAGCAAGGCTTCTACATCATCGTCTTTTGCTTGAAAAATACTCATTATTTATTGTATGTTTGTCACTTCTCAGTTAGTATTAGAGATTCGAGTCTCTTTTCTCAT

Fln Alignment:

sp_v1.1_unigene19647___KADRKAAL-DVAAWMFNVSTSVGIIMVNKGLMAR--YGFTFATTLTGLHFAMTTLMTIILRCMGYIQPSHLPFSELAKFVICANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFFEVLFDKIRYSRDTKLSILVVLVGVAICTVTDVSVNTKGFVAAAIAVWSTSMQQYYVHYLQKKYALGSFDLLGHTAPLQAATLLILGPFLDYWLAEKRVDLYDYSITSVLFITLSCVIAVGTNLSQFICIGRFTAVSFQVLGHMKTIFVLVLGFIFFGKEGLNSQVVLGMFLAVIGMVWYG---------NASGKPGGK
Q9SRE4_______________ESEKKSAVSDVGAWAMNVISSVGIIMANKQLMSSSGFGFGFATTLTGFHFAFTALVGMVSNATGLSASKHVPLWELLWFSIVANISIAAMNFSLMLNSVGFYQISKLSMIPVVCVLEWILHSKHYCKEVKASVMVVVIGVGICTVTDVKVNAKGFICACTAVFSTSLQQISIGSLQKKYSVGSFELLSKTAPIQAISLLICGPFVDYLLSGKFISTYQMTYGAIFCILLSCALAVFCNISQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSE-MTFKNIAGMAIAIVGMVIYSWAVDIEKQRNAKSTPHGK

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1342		10	90		0.90298
1348	11			88	0.923564
1349		11		88	0.923564
1351	88			11	0.923564
1352		88		11	0.923564
1353	88		11		0.923564
1356	88			11	0.923564
1431	78			7	0.999974

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain