SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19643

Length: 491 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene19643
CGTCGTGACCTTGGCTGTCACTCAACTATTCATCCTAAAGGCATTTGGAGTTTCTGAGACGGAGAAATGGATCCTAAAGGCGTTGTTATTGTGATGCTACCGTGCTTCCTATTCATGGTGGCCACTCTAACTGTAAGTGCAGCAGCTGTTAATTTGAGTAATGATCGGACCGATTCTGCTTCTTCTTCTGATGAATTTGCTTTTAATGGACGTGCTGTGCTGGACGAGAAAAGTGACAAATTCCGATCATCAATGGACCGTCACGAGAAAAGGGATATTGAAGCTCTTCTGGCTTTTAAAAGACAAATAAAATCGGATCCATCTGGAATGTTGTCCAACTGGACAGCAGAGAACGCACAGCAGGTGTGCTCCTGGCATGGTATTACCTGCAGGAAACACACCAGAAGAGTTGTCGCTGTAATACTTGCTAATGAGGAGTTGTATTGGGATGCGTATCACGGAGACGTGTATAATGAGTCTCACAGATTGAG

Ace file of the UniGene sp_v1.1_unigene19643

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	OSJNBb0045P24.8 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XWN3_ORYSJ	-	-	6.0e-07	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	unknown [Picea sitchensis]	-	-	7.98987e-19	55%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	7.98987e-19	55%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: Distance to subject end: 655 aas, your sequence is shorter than subject: 141 - 818

Fln protein: MDPKGVVIVMLPCFLFMVATLTVSAAAVNLSNDRTDSASSSDEFAFNGRAVLDEKSDKFRSSMDRHEKRDIEALLAFKRQIKSDPSGMLSNWTAENAQQVCSWHGITCRKHTRRVVAVILANEELYWDAYHGDVYNESHRL

Protein Length: 142

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTATTCATCCTAAAGGCATTTGGAGTTTCTGAGACGGAGAA_-_ATGGATCCTAAAGGCGTTGTTATTGTGATGCTACCGTGCTTCCTATTCATGGTGGCCACTCTAACTGTAAGTGCAGCAGCTGTTAATTTGAGTAATGATCGGACCGATTCTGCTTCTTCTTCTGATGAATTTGCTTTTAATGGACGTGCTGTGCTGGACGAGAAAAGTGACAAATTCCGATCATCAATGGACCGTCACGAGAAAAGGGATATTGAAGCTCTTCTGGCTTTTAAAAGACAAATAAAATCGGATCCATCTGGAATGTTGTCCAACTGGACAGCAGAGAACGCACAGCAGGTGTGCTCCTGGCATGGTATTACCTGCAGGAAACACACCAGAAGAGTTGTCGCTGTAATACTTGCTAATGAGGAGTTGTATTGGGATGCGTATCACGGAGACGTGTATAATGAGTCTCACAGATTGAG

Fln Alignment:

sp_v1.1_unigene19643___KGVV-IVMLPCFLFMVATL---TVSAAAVNLS---------------NDRTDSASSS---DEFAFNGRAVLDEKSDKFRSSMDRHEKRDIEALLAFKRQIKSDPSGMLSNWTAENAQQVCSWHGITCRKHTRRVVAVIL
B8LQX6_______________KGVLSMMMLVCFLRLATTIALDTVSEATISYSMKPYRSKHGLYHDYLHDRVRGRSASVQPHDFVLKEDEGNLEHAEFTASSMDAHDRRDVEALLSFRKALTSDPDGSLLNWTSENSDNVCSWNGIFCRKRTKRVVAIIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain