SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19638

Length: 2154 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene19638
CGTCGTGACCTTGGCTGTCACTCAACTTCTTTTCTTTGGAAGGCATCTTTTTTCACTTTGGGCGGTGGTTAAAAGGCCGTCGTGACCTTGGCTGTCACTCAGATTTTTTCCTCTTGGCACAGGGCGTGGACTCTGGGTAGTGGTTAAAAGGCATCAATTTCCATCAAGTTGTTGAATTTTTGTGGTTGATTTTTTATGGTTGGCGCAGGGTATTTCCTCTATATTCTCATCGGGGAATCCATTAAAGTCAATAATGTTACTGCCCTCTATCACACGATATCCAGATGGCTATTGGTATTAGCCCCTGTATCCGTGGGATATATATGTCATTTCAACTGTTACTCAGTAGATTGTACCAACCTTTGCAGTCCATAACATTTTTCTGACTCTGTTGGACTACTGTTATTAATATTTTTTAATCCGAGAGCTCTGTCTGTACTTTATTGTAATGATAACTTTACTCAGAGTACCCTCTTTAGATGACGGGCAAAGGGTGTTACCATAGCACTGTTTATCTGCATAAAAACCTTGCGTTTCAACACTGTCATTTTCCCTTGCCTTATTTCCTCGTCTTTTCGTTGTCTTATTTCGCCGTCTCTTTCTCTGGTTGTTTTCAGTGAGTCAGTCAATCAGTCATACACGCTTCTTCTATGGGTCAAGAAAATTGAAATGCCTGTATTGCGCGCACACCTACAACGCTGTCTGACACCATACCCACTTAATAATTTGTGCAATTCTAACTGCTGGAGTTTGATTTGGGAGGTCAAATATAATTTTTCCTGAAGTCAATCACAGTAGCAGCCACGGCTTGTATCCATCCATGAATCTTCCAAGCCGCGTTTGTTGACTAGGGACATGCCATGTCCCTTGCGGGCTGATTGCTTCCGGAAGGACTTTTCTCTCTACGGGAAGAAGTTCAATTTTGAGCTTTACATGGTCGGTGGCCTTAAATATTGGGGCAGTTTGTTGGGGGTGCCCTTAATTTTGGTCTTTATAGGGGACTTTTGCGAGGATAAATCACTATCTTTTTTTGGCTCTGGGTTGTCACCGAAAACAAAAGCTCTCTTGTTCTATCTTGTGGGTTAGGACGAGAAGATTGTGAATTGGTTCAGGAGGAACTGAATCATAATTCAAGACATCATGGCGCAGGGTTTCCTCTGCAAGCTGGCCCTTGTTATGGTAGTTATGGGATTGAGTGCAGTCCTAAGCGTGTCATCCAATTCTGAGGGGGATGCACTTCATGCTTTCAGGAGGAGTTTATCAGATCCGCTCAATGTTTTGCAGAGTTGGGATCCTACTCTTGTCAATCCTTGCACTTGGTTCCACATCACTTGCAATCAGGACAACCGTGTTACCAGGATAGACCTGGGTAATTCGAATCTCTCCGGTAGTCTTGTGCCTGAGCTTGGGAGGCTTGAACACTTGCAATACCTTGAGCTCTACAAAAATCATATTCAAGGAAGCATTCCAGAGGAATTTGGCAATCTAAAGAGCCTTATAAGCATGGACTTGTATAACAACAACATTACGGGTGAAATTCCTCGATCATTGGGGAATTTGAAGGCACTTGTATTTTTACGCCTTAACAATAATTCACTGGCTGGACAAATTCCCAGGGAACTTGCTAAAATTTCAAACCTTAAAGTCGCGGATGTCTCCAATAATAATTTGTGTGGGACTATTCCAACAACTGGACCATTTGAACGCTTTCCAATGACAAATTTTGAAAACAACCCACGCCTCAGGGGTCCTGAATTGCAAGGGGGAGCAGCATATGATTCAGGATGCTGATGGAAGCAAGCAGGATGCAGGGAAAGTTTTGTGGAGATGTCATTTTGTAAACAAGGATAAATTTCAGTCTCTCCTATATATTTTCCATGTTCGATTGAAAAGAAAGTTCTATGCTTAATGTTCTTTTATATGCAACTACCGGTAGAAAATTCCCACCAACTTCCAGGCCTTCTCTATTGGTCTATGCAATATTGTAATTTAACTAGATATGAGCTTTACTAAGATATCAAAGAAAATATTGCCAGATACTCTGTCTGAGCACTACCAGTTTTCTGCCATATATTGATGTATAAGACATGAATGCTAATGGATAATTAAAATCCTACTACATTAAATGCATGAGAACTTGTGCTCCAAAAAAAC

Ace file of the UniGene sp_v1.1_unigene19638

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Leucine-rich repeat protein n=1 Tax=x Citrofortunella mitis RepID=Q84N26_9ROSI	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	leucine-rich repeat protein	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	84%
Blast2go	signal transduction	GO:0007165	Biological Process	84%
Blast2go	kinase activity	GO:0016301	Molecular Function	84%
Blast2go	protein binding	GO:0005515	Molecular Function	84%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	84%
Blast2go	endomembrane system	GO:0012505	Cellular Component	84%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	0.0	84%
Blast2go	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	0.0	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKM6

Fln msg:

Fln protein: MAQGFLCKLALVMVVMGLSAVLSVSSNSEGDALHAFRRSLSDPLNVLQSWDPTLVNPCTWFHITCNQDNRVTRIDLGNSNLSGSLVPELGRLEHLQYLELYKNHIQGSIPEEFGNLKSLISMDLYNNNITGEIPRSLGNLKALVFLRLNNNSLAGQIPRELAKISNLKVADVSNNNLCGTIPTTGPFERFPMTNFENNPRLRGPELQGGAAYDSGC*

Protein Length: 218

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTCTTTTCTTTGGAAGGCATCTTTTTTCACTTTGGGCGGTGGTTAAAAGGCCGTCGTGACCTTGGCTGTCACTCAGATTTTTTCCTCTTGGCACAGGGCGTGGACTCTGGGTAGTGGTTAAAAGGCATCAATTTCCATCAAGTTGTTGAATTTTTGTGGTTGATTTTTTATGGTTGGCGCAGGGTATTTCCTCTATATTCTCATCGGGGAATCCATTAAAGTCAATAATGTTACTGCCCTCTATCACACGATATCCAGATGGCTATTGGTATTAGCCCCTGTATCCGTGGGATATATATGTCATTTCAACTGTTACTCAGTAGATTGTACCAACCTTTGCAGTCCATAACATTTTTCTGACTCTGTTGGACTACTGTTATTAATATTTTTTAATCCGAGAGCTCTGTCTGTACTTTATTGTAATGATAACTTTACTCAGAGTACCCTCTTTAGATGACGGGCAAAGGGTGTTACCATAGCACTGTTTATCTGCATAAAAACCTTGCGTTTCAACACTGTCATTTTCCCTTGCCTTATTTCCTCGTCTTTTCGTTGTCTTATTTCGCCGTCTCTTTCTCTGGTTGTTTTCAGTGAGTCAGTCAATCAGTCATACACGCTTCTTCTATGGGTCAAGAAAATTGAAATGCCTGTATTGCGCGCACACCTACAACGCTGTCTGACACCATACCCACTTAATAATTTGTGCAATTCTAACTGCTGGAGTTTGATTTGGGAGGTCAAATATAATTTTTCCTGAAGTCAATCACAGTAGCAGCCACGGCTTGTATCCATCCATGAATCTTCCAAGCCGCGTTTGTTGACTAGGGACATGCCATGTCCCTTGCGGGCTGATTGCTTCCGGAAGGACTTTTCTCTCTACGGGAAGAAGTTCAATTTTGAGCTTTACATGGTCGGTGGCCTTAAATATTGGGGCAGTTTGTTGGGGGTGCCCTTAATTTTGGTCTTTATAGGGGACTTTTGCGAGGATAAATCACTATCTTTTTTTGGCTCTGGGTTGTCACCGAAAACAAAAGCTCTCTTGTTCTATCTTGTGGGTTAGGACGAGAAGATTGTGAATTGGTTCAGGAGGAACTGAATCATAATTCAAGACATC_-_ATGGCGCAGGGTTTCCTCTGCAAGCTGGCCCTTGTTATGGTAGTTATGGGATTGAGTGCAGTCCTAAGCGTGTCATCCAATTCTGAGGGGGATGCACTTCATGCTTTCAGGAGGAGTTTATCAGATCCGCTCAATGTTTTGCAGAGTTGGGATCCTACTCTTGTCAATCCTTGCACTTGGTTCCACATCACTTGCAATCAGGACAACCGTGTTACCAGGATAGACCTGGGTAATTCGAATCTCTCCGGTAGTCTTGTGCCTGAGCTTGGGAGGCTTGAACACTTGCAATACCTTGAGCTCTACAAAAATCATATTCAAGGAAGCATTCCAGAGGAATTTGGCAATCTAAAGAGCCTTATAAGCATGGACTTGTATAACAACAACATTACGGGTGAAATTCCTCGATCATTGGGGAATTTGAAGGCACTTGTATTTTTACGCCTTAACAATAATTCACTGGCTGGACAAATTCCCAGGGAACTTGCTAAAATTTCAAACCTTAAAGTCGCGGATGTCTCCAATAATAATTTGTGTGGGACTATTCCAACAACTGGACCATTTGAACGCTTTCCAATGACAAATTTTGAAAACAACCCACGCCTCAGGGGTCCTGAATTGCAAGGGGGAGCAGCATATGATTCAGGATGCTGA___TGGAAGCAAGCAGGATGCAGGGAAAGTTTTGTGGAGATGTCATTTTGTAAACAAGGATAAATTTCAGTCTCTCCTATATATTTTCCATGTTCGATTGAAAAGAAAGTTCTATGCTTAATGTTCTTTTATATGCAACTACCGGTAGAAAATTCCCACCAACTTCCAGGCCTTCTCTATTGGTCTATGCAATATTGTAATTTAACTAGATATGAGCTTTACTAAGATATCAAAGAAAATATTGCCAGATACTCTGTCTGAGCACTACCAGTTTTCTGCCATATATTGATGTATAAGACATGAATGCTAATGGATAATTAAAATCCTACTACATTAAATGCATGAGAACTTGTGCTCCAAAAAAAC

Fln Alignment:

sp_v1.1_unigene19638___MAQGFLCKLALVMVVMGLSAVLSVSSNSEGDALHAFRRSLSDPLNVLQSWDPTLVNPCTWFHITCNQDNRVTRIDLGNSNLSGSLVPELGRLEHLQYLELYKNHIQGSIPEEFGNLKSLISMDLYNNNITGEIPRSLGNLKALVFLRLNNNSLAGQIPRELAKISNLKVADVSNNNLCGTIPTTGPFERFPMTNFENNPRLRGPELQGGAAYDSGC
A9NKM6_______________MAKGFLCKLALVAVVIGLSAVLSVSSNSEGDALHAFRRSLSDPLNVLQSWDPTLVNPCTWFHITCNQDNRVTRIDLGNSNLSGSLVPELGRLEHLQYLELYKNRIGGSIPEEFGNLKSLISMDLYNNNITGEIPRSLGNLKSLVFLRLNNNSLTGQIPRELTKISNLKVSDVSNNDLCGTIPTTGPFERFPMTNFENNPRLRGPELQGGAAYDSGC

SNPs (tot: 88)

Position	A %	C %	G %	T %	Probability
78	33	66			0.997452
80		33		66	0.997452
81	33	66			0.997452
82	33		66		0.997452
84			66	33	0.997452
85	66			33	0.997452
88	33			66	0.997452
91		33	66		0.997452
92	33	66			0.997452
93	33			66	0.997452
97	66			33	0.997452
98		66	33		0.997452
101	66			33	0.997452
149	87	12			0.992554
151			87	12	0.992554
153	87		12		0.992554
155		87	12		0.992554
157	87	12			0.992554
160			12	87	0.992554
162		87		12	0.992554
163	87		12		0.992554
168	87	12			0.992554
169	12		87		0.992554
192		13		86	0.999973
193			13	86	0.999973
195		13		86	0.999973
196			13	86	0.999973
198	86		13		0.999973
199	13			86	0.999973
200		13	86		0.999973
201		13	86		0.999973
212		13	86		0.999973
450	88		11		0.923564
487		85		14	0.993533
532			12	87	0.992554
538	14			85	0.993533
539		14		85	0.993533
541	85			14	0.993533
542	85			14	0.993533
543		85	14		0.993533
544	85		14		0.993533
575		88		11	0.923564
578		12		87	0.992554
579			12	87	0.992554
581	12		87		0.992554
582			12	87	0.992554
585	12			87	0.992554
586		87	12		0.992554
588			12	87	0.992554
591		11	11	77	0.968132
592	11		11	77	0.968132
593		77	22		0.999999
947		28	71		1.0
950	28	71			1.0
951			28	71	1.0
953	71		28		1.0
955	71		28		1.0
957	71		28		1.0
958	28			71	1.0
959		28		71	1.0
960	28		71		1.0
963		33	66		1.0
981		50		50	1.0
997		25		75	0.996473
998	75		25		0.996473
1000	75	25			0.996473
1002			75	25	0.996473
1004	25		75		0.996473
1005	75	25			0.996473
1009			25	75	0.996473
1010			25	75	0.996473
1011		25	75		0.996473
1012		75		25	0.996473
1014	75			25	0.996473
1015		25	75		0.996473
1016	25		75		0.996473
1017	75	25			0.996473
1019	75	25			0.996473
1629	2		97		0.979771
2075		3		94	0.95615
2135	88	11			0.999952
2150	9	18			0.999994
2153	80			20	0.995493
2154	75			25	0.996473
2155	75			25	0.996473
2156	75		25		0.996473
2157	75			25	0.996473
2158	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain