SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19578

Length: 1518 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19578

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TRAM_LAG1_CLN8 domain containing protein	-	-	3.0e-33	28%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	55%
Blast2go	protein	-	-	0.0	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9R7Z6

Fln msg:

Fln protein: MEMGQRVRTVAVGVVAWTVTFIGVRKILSKRSFDFCNRVVSLIHVAVALWLCSVSVEDWKRPLHPLASPATPLQIRALSMSLSYFIYDFSCCLFDSSISVSNCIHHSVSILGLGVGVVYATCGSELTGCLWLMEISNPFMHMRELLKELGYKDSRLSILNDICFAFIFTLARLMVGPYLVYLTITANNPLIVKVTSVGLQVVSIFWFYKIAKMVQYKIAKAKKSQKTL*

Protein Length: 230

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTCGTGACCTTGGCTGTCACTCGATTTCTACCGATCTGTACTATAATTTGAATGATAGATAAATTTATTAGACATATTTCCATCGAGATTTGCTGATCAGGTAATGGAGTGAGGATGAAGTAGCCGTGGGGAAGAGTGGAGTGGAGGACAAGAGAA_-_ATGGAGATGGGGCAGAGAGTTAGAACAGTGGCGGTGGGAGTGGTTGCGTGGACTGTAACGTTCATAGGTGTCCGGAAGATTTTGTCGAAACGCTCCTTTGATTTTTGTAACAGGGTGGTTTCTCTCATCCATGTGGCTGTAGCTTTGTGGTTATGTTCTGTCTCTGTCGAAGATTGGAAACGCCCACTTCATCCTTTGGCCTCTCCTGCTACACCATTACAGATTCGTGCATTGTCGATGAGCCTGTCTTATTTCATTTATGACTTCAGTTGTTGCCTATTTGATTCTTCTATCAGTGTTTCCAACTGCATTCATCATTCAGTTAGCATATTGGGCCTTGGAGTTGGCGTTGTATATGCAACATGTGGGTCAGAGTTGACTGGATGCTTATGGCTTATGGAGATTTCAAATCCATTTATGCACATGAGGGAGCTCTTAAAGGAGTTAGGTTACAAGGACTCCAGGTTGAGTATTCTAAATGATATTTGTTTTGCTTTCATTTTTACACTTGCTAGATTGATGGTTGGACCTTATCTTGTATATCTCACAATAACAGCGAACAATCCATTGATTGTGAAGGTAACTTCAGTTGGCTTACAGGTAGTCAGTATCTTCTGGTTCTACAAGATAGCAAAAATGGTTCAATACAAGATAGCCAAAGCAAAGAAGTCACAAAAGACATTATAA___CTGTTCTTATTAAGCATAAGTAAGGCCCTTAATGCTGGAAGGGAAATCAAGTCTTACACTTGTTGGAAACTCTTCGTTAAGTAATAAAGTTTAAAGTGGGGGAAATCCAGGAGAGAAATTTGCTTACTGTGGTCTGTCCAAGTAAATCAGGCACGCAAAAAAGCATGATGAAATAACCTTCCTTGGTTGCGAGTTCCTGTATTGTTTGGTTGTTATACTATGTACATATTCATAACTATGTTAAAAATTCATTCTGTTTGGCAGGTTTATCTCTGGACTTAAATATGATATCTTTTGTTCTGTTTATTCATATTGATTTCCTTCAAGGTACTTCTTATTTGATAGTGAAGAACAGCATTGGTTCTTGAGTATATTGAGAAAAATTCTTACTTTAGTCACGTTTGTAAAAGGAGAAATAAATATGCTCTTCCCCAACATAGCTTTGAGGCAGACTCATTGAGCCGTTGAGACAGCAGCACCTTTGTAGGGCTAGTCATCGAGAGGTTTTGAGTTTATCTTCACTGCTGAAACTATCACTATAGATTAGATGTTCCTTGGGAGCAAAGGCAGAGGAAGACCTCGTTCATGGATGAGGCTTTTTATTCAGACATCTCGATGACCCAAAAATATCTTGCTCAGAGTTCTATATTTT

Fln Alignment:

sp_v1.1_unigene19578___FIGVRKILSKRSFDFCNRVVSLIHVAVALWLCSVSVEDWKRPLHPLASPATPLQIRALSMSLSYFIYDFSCCLFDSSISVSNCIHHSVSIXXXXXXXXYATCGSELTGCLWLMEISNPFMHMRELLKELGYKDSRLSILNDICFAFIFTLARLMVGPYLVYLTITANNPLIVKVTSVGLQVVSIFWFYKIAKMVQYKIAKAKKSQKTL
B9R7Z6_______________FLLIRKVVPSRSFEFCNRLVSTIHAIVAVTLASISVEDWRCPVRPLASECTPSQMIALAVTVSYLIYDLLCCLFDTRPNLDNTIHHLVSIVGLGAGLVYHKSGTELVAALWITEISSPFLHLRELLKELGYRNTNLNLAADISFAVVFSVGRMVVGPYLAYATLTANNPIIIQAMAVGLQMVSAFWFYKIVRMVKYKLATRTTSKKVV

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
24	33		66		0.997452
30		33	66		0.997452
37			66	33	0.997452
44		66	33		0.997452
372	44			55	1.0
431	87	12			0.992554
432			12	87	0.992554
437			14	85	0.993533
439			14	85	0.993533
445	14			85	0.993533
446			14	85	0.993533
448	85	14			0.993533
547			75	25	0.996473
549			75	25	0.996473
553		25	75		0.996473
554	75			25	0.996473
555		25	75		0.996473
556	25			75	0.996473
558		25	75		0.996473
566	33		66		1.0
608		16	83		0.994512
609		16	83		0.994512
610			83	16	0.994512
611	83			16	0.994512
615		83	16		0.994512
617		16		83	0.994512
619	83	16			0.994512
620	83			16	0.994512
621		16	83		0.994512
704	11			88	0.923564
708	88		11		0.923564
740	88		11		0.923564
749		10		90	0.90298
753		10		90	0.90298
758	90	10			0.90298
759		10	90		0.90298
760			90	10	0.90298
762	90		10		0.90298
763	90		10		0.90298
769		10	90		0.90298
771		10		90	0.90298
1030	58		41		1.0
1041		66		33	1.0
1130	12	87			0.992554
1138	25			75	0.996473
1139	25	75			0.996473
1140			25	75	0.996473
1425	33			66	0.997452
1433	66		33		0.997452
1445		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain