SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19566

Length: 434 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene19566
CGTCGTGACCTTGGCTGTCACTGAAGAAATTACAAAACCCTTCTAAAACCTCCGAAGCCGTAACTCAATAGAGCTGCTCTTGAAAATATAGAGCGGCCCGACTGAAGAAACTACAAATCCCTTCTCAAACCACTGAAGACGTAAATTCAATAGGGCTGCTCTTGAAAACGGTCGTTCTCCGTTCTCCATTCTTCAGCATGGCGGCCGCAACCGGACAGCTTAACTTTGAGACATTGCAGGACCTTGTTACGCCGCACATCGATTCTTTTAACTACTTTGTAGGAAGGGGCTTGGAGTTGGCTGTTATGAACTTGAATTCCGTGGAGATTACGCAGCCCGGAAGCTCAACAAAACTGAGAATATGGCTAGAGCGGCCGACTATATTGCGTCCAGACAAGGAAACAACAGAGAGCGTTCACGATCAGCGTTTGCTT

Ace file of the UniGene sp_v1.1_unigene19566

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9T5Q2_PHYPA	-	-	2.0e-11	46%
FL-Next	sp=DNA-directed RNA polymerase; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	46%
Blast2go	predicted protein [Physcomitrella patens subsp. patens]	-	-	4.65058e-11	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	DNA-directed RNA polymerase, subunit 2	IPR015712	-	4.65058e-11	63%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: A9T5Q2

Fln msg: Distance to subject end: 1091 aas, your sequence is shorter than subject: 79 - 1199

Fln protein: MAAATGQLNFETLQDLVTPHIDSFNYFVGRGLELAVMNLNSVEITQPGSSTKLRIWLERPTILRPDKETTESVHDQRLL

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCACTGAAGAAATTACAAAACCCTTCTAAAACCTCCGAAGCCGTAACTCAATAGAGCTGCTCTTGAAAATATAGAGCGGCCCGACTGAAGAAACTACAAATCCCTTCTCAAACCACTGAAGACGTAAATTCAATAGGGCTGCTCTTGAAAACGGTCGTTCTCCGTTCTCCATTCTTCAGC_-_ATGGCGGCCGCAACCGGACAGCTTAACTTTGAGACATTGCAGGACCTTGTTACGCCGCACATCGATTCTTTTAACTACTTTGTAGGAAGGGGCTTGGAGTTGGCTGTTATGAACTTGAATTCCGTGGAGATTACGCAGCCCGGAAGCTCAACAAAACTGAGAATATGGCTAGAGCGGCCGACTATATTGCGTCCAGACAAGGAAACAACAGAGAGCGTTCACGATCAGCGTTTGCTT

Fln Alignment:

sp_v1.1_unigene19566___QLNFETLQDLVTPHIDSFNYFVGRGLELAVMNLNSVEITQPGSSTKLRIWLERPTILRPDKETTESVHDQRLL
A9T5Q2_______________ELDCSSLYDLTKPHTESFDYFVERGLEEAVRRLQPIELKHPISGTSLRLWVEKPNVSPPMKDLGSQALDQRLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain