SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19495

Length: 791 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19495

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SJS0_RICCO	-	-	1.4013e-45	62%
FL-Next	sp=Methyl-CpG-binding domain-containing protein 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%
Blast2go	dna binding	-	-	1.4013e-45	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytosine C-5 DNA demethylase activity	GO:0051747	Molecular Function	1.4013e-45	72%
Blast2go	DNA binding	GO:0003677	Molecular Function	1.4013e-45	72%
Blast2go	mitochondrion	GO:0005739	Cellular Component	1.4013e-45	72%
Blast2go	nucleus	GO:0005634	Cellular Component	1.4013e-45	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Methyl-CpG DNA binding	IPR001739	-	1.4013e-45	72%
Blast2go	Zinc finger, CW-type	IPR011124	-	1.4013e-45	72%
Blast2go	DNA-binding, integrase-type	IPR016177	-	1.4013e-45	72%

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
19	20	80			0.995493
21		80	20		0.995493
23		80	20		0.995493
24	80			20	0.995493
172			25	75	0.996473
214			90	10	0.90298
215			10	90	0.90298
219	90	10			0.90298
222		10		90	0.90298
223	10		90		0.90298
279	10		90		0.90298
667	66		33		0.997452
670	66		33		0.997452
671		33		66	0.997452
673	33			66	0.997452
674		33	66		0.997452
675			33	66	0.997452
676	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain