SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19484

Length: 1253 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19484

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ribosome recycling factor family protein / ribosome releasing factor family protein; K02838 ribosome recycling factor	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	ribosome recycling factor	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	translational termination	GO:0006415	Biological Process	0.0	80%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVE5

Fln msg:

Fln protein: MNFSTMENIICVLGVKQREIKTMAACAVLRRALAFSRSSSSHILNSHKRSVLCYSASFTRGYRSNDNGMFINFCVNTHLEPPLLNQWQRGFAKAKKSSDESTVEVVPNVGPTIKSTALAQMQAGIDALSRELSKLRTGRASAGMLDHIIIESDGVRTPLSRIAAVSVLDSQTLSVTPYNLDVIKDVERAIVSSPLGLNPTPEGQRLVVPIPALTKEHIQAMSKLVSKASEDVKQSIRRARQKALDSIKKAGSSMSKDDVKRLEKEMDDLTKKFVKTAEDMCKAKEKEITGK*

Protein Length: 293

Fln nts: CGTCGTGACCTTGGCTGTCACTC_-_ATGAACTTCTCAACTATGGAGAATATTATATGTGTTTTGGGTGTTAAACAACGAGAGATCAAAACCATGGCCGCTTGTGCAGTGTTACGGCGTGCCTTGGCCTTTTCAAGATCATCCTCCTCCCATATACTCAACTCTCACAAACGATCAGTGTTATGCTATTCAGCATCTTTTACCAGGGGTTATCGTAGCAATGACAATGGAATGTTCATCAATTTTTGTGTTAATACACACTTGGAGCCGCCTCTGCTTAATCAATGGCAGAGGGGATTCGCCAAAGCAAAGAAGTCCAGTGATGAGAGTACTGTTGAAGTTGTGCCGAATGTTGGCCCTACTATAAAGTCAACTGCTTTGGCACAGATGCAGGCTGGGATAGATGCATTATCAAGAGAACTTTCCAAACTGCGTACAGGAAGAGCATCAGCAGGTATGCTTGATCACATTATTATCGAATCTGATGGTGTACGAACACCTCTAAGCCGTATTGCTGCTGTATCTGTCTTAGATTCACAAACACTCAGTGTGACACCTTATAACTTAGATGTCATTAAGGATGTTGAGCGTGCGATTGTTTCATCTCCTTTGGGCTTGAATCCAACACCTGAAGGACAACGCCTCGTTGTGCCTATCCCAGCATTAACAAAGGAGCATATTCAGGCAATGTCTAAGCTGGTTTCAAAGGCGTCTGAAGATGTCAAACAGAGTATAAGAAGAGCAAGGCAAAAGGCATTAGACTCAATCAAGAAGGCTGGATCTAGCATGTCCAAAGATGATGTCAAGAGGCTAGAGAAAGAAATGGATGATCTGACAAAGAAATTCGTGAAAACTGCTGAAGATATGTGTAAAGCAAAGGAAAAGGAAATAACGGGAAAGTAA___ATTGAAGACAATTGGCAAGTCTTTCATGTGGTCAGTTATGTCGTTTTGCTACAGAATTACTGTTGGCAATCAATTTTGGGTAAAAATGCACAGTTAAATTTGTCTAATGTGACTCTATATGGAGAGTTAAATATTTTTCACAAGGCATAAATAGGATTAGCTTTTCGTAAATCTTAGGGGCTCTGCCAAAATGGAGCTTTTCATACTTTCCAAGGCATAAATAAAAGCAAACCACAATTGGCCTGGAACACGTTTGTTACATGATTAAGGAAGATTATTGCAGATTGAAGTTTTGTGTCGATTTTCCCGAGCGGTTGTCTGTCTTTATGCATTAAACAATACGTGTACTGGATG

Fln Alignment:

sp_v1.1_unigene19484___VLCYSASFTRGYRSNDNGMFINFCVNTHLEPPLLNQWQRGFAKAKKSSDESTVEVVPNVGPTIKSTALAQMQAGIDALSRELSKLRTGRASAGMLDHIIIESDGVRTPLSRIAAVSVLDSQTLSVTPYNLDVIKDVERAIVSSPLGLNPTPEGQRLVVPIPALTKEHIQAMSKLVSKASEDVKQSIRRARQKALDSIKKAGSSMSKDDVKRLEKEMDDLTKKFVKTAEDMCKAKEKEITGK
A9NVE5_______________VLCYSPSLARGYRSNDNGMFLNSYVNTHLDPPLLNQWQRGFAKAKKSIDESTVEVVPNVGPTIKSTASTQMQAGIDALSRELSKLRTGRASAGMLDHIIIESDGVRTPLSRIAAISVLDSQTLSVTPYDLEAIKDVERAIVSSPLGLNPTLEGQRLVVPIPALTKEHTQAMSKLVSKASEDVKQSIRRARQKALDSIKKAVSSMSKDDVKRLEKEIDDLTKKFVKTAEDMCKAKEKEIMGK

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
179	14			85	0.993533
180		14		85	0.993533
181	85	14			0.993533
186	85		14		0.993533
191		14	85		0.993533
464		12		87	0.992554
568			20	80	0.995493
570	80	20			0.995493
575	20			80	0.995493
577	80	20			0.995493
584	80	20			0.995493
589		20	80		0.995493
708	16			83	0.994512
714	50		50		1.0
789		66		33	1.0
926		12		87	0.992554
992	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain