SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19480

Length: 844 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19480

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / protein binding	-	-	5.0e-16	45%
FL-Next	sp=DEAD-box ATP-dependent RNA helicase 46; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	46%
Blast2go	protein	-	-	4.00696e-17	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	4.00696e-17	71%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	4.00696e-17	71%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	4.00696e-17	71%
Blast2go	protein binding	GO:0005515	Molecular Function	4.00696e-17	71%
Blast2go	ATP binding	GO:0005524	Molecular Function	4.00696e-17	71%
Blast2go	vacuole	GO:0005773	Cellular Component	4.00696e-17	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	WW/Rsp5/WWP	IPR001202	-	4.00696e-17	71%

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
25	80		20		0.995493
26		80	20		0.995493
27			20	80	0.995493
28			20	80	0.995493
101	85			14	0.993533
102		85	14		0.993533
103			14	85	0.993533
104		85	14		0.993533
105		85	14		0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
406	419	GCT GCT GCT GCT GC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain