SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19473

Length: 1653 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19473

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SWE4_RICCO	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	pentatricopeptide repeat-containing	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	71%
Blast2go	nucleobase:cation symporter activity	GO:0015391	Molecular Function	71%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	71%
Blast2go	mitochondrion	GO:0005739	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	0.0	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTV5

Fln msg: your sequence is longer than subject: 328 - 257

Fln protein: MSFQRAFVCYSSTASGISKRLFSYHPRINSLILSKFSISPPPPFTIRSSDIHNFVSNTKSLQSLRPYIAPYKTVYSTKLHFERVPQHRNLIIQANSDNASEDDSDDEEEKKKQAEKPKGAVDPKKHKPLFDPFNKKPVIQEPDDPTDLQEVFHKMREDGLVQQAVKMFDALSKDGLTHEAMKLFGQMKDKSKMPDVVAHTAVVEAYAKAGKPKDALKVFMRMQASGCLPNSYSYSVLIQGLCQGGMLQEAGKYTLEMLGYGWKPNAATYVALVDSYLRAQKADEMRQLLVKLKEKGFVADDKAARQHMKSMGRFNRGVMDMLFGQYK*

Protein Length: 329

Fln nts: CGTCGTGACCTTGGGTGTCAGTCACTCTTTCAACCCTAAACCATACCCTAGCTTTAAACTCTAAACCTTGTAATGGACCCTAGCTTTCCATCCGCTAAACCCTGGGATAAGCCCTAGCTTTCCACCCGCTAAACCCTGGGATAAGCCCTAGCCCTGGTTATCAACCCTAAGAAGCCTCAACTGGAACAGATAATAGCAATCGCAACAAACACTTTCAGTAACAGCAAAAATCTTCACTCTTCGGCTCTCTGCTGCAGTTGGCCATAACAACGAGCAAG_-_ATGTCGTTCCAACGCGCTTTCGTCTGTTATTCATCAACAGCCAGCGGAATCAGTAAGCGTCTATTCTCATACCATCCTCGTATAAATTCCTTGATTCTATCAAAATTCTCAATTTCTCCTCCTCCTCCGTTCACAATCAGATCTTCTGATATCCATAACTTCGTTTCAAATACCAAATCCCTGCAATCCTTGAGACCTTATATCGCTCCATACAAAACGGTATACTCCACAAAACTGCATTTCGAAAGGGTACCCCAGCACCGAAATCTCATCATCCAAGCAAATTCTGACAACGCCTCGGAGGACGACTCAGACGACGAAGAGGAGAAGAAGAAGCAGGCCGAGAAACCCAAGGGCGCCGTGGACCCCAAAAAACACAAACCCTTGTTCGACCCCTTCAACAAAAAGCCTGTCATTCAGGAGCCCGACGACCCCACAGACCTGCAGGAGGTCTTCCACAAGATGAGAGAGGACGGCCTCGTTCAACAGGCCGTCAAGATGTTCGACGCCCTCTCCAAGGACGGGCTGACCCACGAGGCCATGAAGCTCTTTGGACAGATGAAGGACAAGTCCAAGATGCCAGATGTCGTTGCACACACTGCCGTCGTGGAGGCCTATGCCAAGGCCGGCAAGCCCAAGGACGCCCTCAAGGTCTTCATGAGAATGCAGGCCTCGGGGTGCTTGCCCAATTCGTATAGCTACTCTGTTCTCATTCAGGGGCTGTGCCAGGGTGGAATGCTTCAGGAGGCAGGAAAATATACGCTTGAGATGCTGGGCTATGGGTGGAAGCCCAATGCTGCCACTTATGTCGCTTTGGTTGATTCCTACTTGAGGGCACAGAAGGCCGATGAGATGCGGCAGCTCCTGGTAAAGCTGAAGGAGAAGGGGTTCGTCGCCGACGACAAAGCAGCTCGGCAGCACATGAAGAGCATGGGTCGGTTCAACAGGGGAGTCATGGATATGCTGTTTGGGCAGTATAAGTAG___GTGATGTTGAAAGCTTAGGCCTGTAGTTGTACATCTCTCCGTTGCATTCTGGTATTCTTTCTCTTCTGGTAATAAACTCAGAAGGATTGATGCTCTTGTTTGTTAGGGTTCTCACTGATTATGAGTCTTTTGTCATCTGTCTTGATAAAATGATACGAGTTCTCATTTAGCGTAGGATGAGCAGTGTCTGTGGTTTCATAATGTCCAAACAGAACATTCAAGTTTGATTTGTAATGACATTATGGACTTTTATCTCGTGTCCTGCTTCATCTGTGAAAAATATATTCGATTTCAAGTTAGGCCTAGCATTTCAAGTTTCTGCTAGGATAGGGAATTTTCAGGAAAGATATAACTCATTTGAATTGGAAAAACCTTTCTCTGCTCATGTAAG

Fln Alignment:

sp_v1.1_unigene19473___EAMKLFGQMKDKSKMPDVVAHTAVVEAYAKAGKPKDALKVFMRMQASGCLPNSYSYSVLIQGLCQGGMLQEAGKYTLEMLGYGWKPNAATYVALVDSYLRAQKADEMRQLLVKLKEKGFVADDKAARQHMKSMGRFNRGVMDMLFGQYK
A9NTV5_______________EKKKLFGQMKDKSKMPDVVAHTAVVEAYAKAGKPKDALKVFMRMQASGCLPNSYSYSVLIQGLCQGGMLQEAGKYTLEMLSYGWKPNAATYVTLIDSYLRAQKADEMRQLLAKLKEKGFVADDKAARQHMKSMGRFNRGVMDMLFGQYK

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
408	28		71		1.0
409			28	71	1.0
411		71	28		1.0
413		71	28		1.0
414	71			28	1.0
415	71		28		1.0
416	28			71	1.0
420	60		40		1.0
421		40		60	1.0
476	25	75			0.996473
478			25	75	0.996473
479	75		25		0.996473
518	50	50			1.0
529	25		75		0.996473
531	75		25		0.996473
552		50		50	1.0
561	50	50			1.0
615	33		66		0.997452
813		75	25		0.996473
815	75		25		0.996473
834	75		25		0.996473
854	16		83		0.994512
951		50	50		1.0
1039	75		25		0.996473
1040		75	25		0.996473
1089		50		50	1.0
1112	8		92		0.999718
1125		84		16	1.0
1240	93		6		0.999153
1327			8	91	1.0
1331		5	94		0.998578
1383	3			87	1.0
1384	87		3		1.0
1525		30		69	1.0
1575		71		28	1.0
1630	50	50			1.0
1645		66	33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
394	406	CTC CTC CTC CTC C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain