SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19433

Length: 2465 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene19433
CGTCGTGACCTTGGCCGTCGTGACCTTGGCTGTCACTCAATTCCACTGAGTTTTGACAGTGTGACTGAACGTCTTTAATTCTTCTGTTATTGCTTTCTCAAGTCCCGCAGTGGCTTTTGCTGTTCCACGCTCTTTTGAGCCTAGTTTTGGCCTCTTTTGCTTAATTGCCTTATGTGCCGTGGATTCCTTTTCTTCGTTTGTAAATTGAAACATTTATGTAGATTTACACTGCTTTTCGAACCCTGAACAACGGCGTTCTGTATAAAGCCTATTTGAGTAAATGGGGGATTATGCTTTAAATTGAGGGAGGGTTTGTTAGGGGCCGGATATGCTTTGTATGTTTATGTTGACTCGTTTAAGCATTTTGTGATTTTCTTGCTTCAAGATTTACCCTCCTATTTTGATGCTTTGTGTTTACTGTATACGAAGATTTTGAATTCCCGATTCCAATTAGTTTTTGTGCCAATTGAGGAGAATCCAGAGCTTAGTTTTTTGGGGGATTGGACCTAGATCGGTTTGGTTATTTCCCGTAAGCAGTTAAGTTTACCAAGAAGAACTGTCGTGATTCGCTAATCTAGTTCTTTTCCGCTAAAAGTTTGGGAAATTGTGTCGGGCGTCCCCTTCGGCTGGTTCCTATTTTTATCCATGCTACAATGATAGAGCCGGTTCTTTCTCTCGTTTAAAACGGCTTTAACAAATCCCCTCGTTGCTCAAAGTTGGTGGACTTTCCCTGGTTCTGGTAGGCCGGACTGAATCAGGAAAGGTTCAGAAATATTTGAGGCTTCCTTTTGATGTTGGTTTAATAATTTAACTTTATATAAATATACAAGGATCAGAAAGCTAGTAGGGACTTTGACAGGCGAAAGCAATGGCGATTGCGGAGCAGAACGAATCGATCCTTGCGATGTTAAAGTTTTCTGCTCTACCAATCGTAAAGGTGTTTTTGATGTGCTCTCTTGGCTGTCTCATGGCGTCCAAGTATGTCAACATTCTTACGCCTGCTGGACGGAAGCTTTTGAACGGGCTTGTATTCACTCTCTTTCTTCCATGTCTAATCTTCACACAATTGGGGAGGGCTGTGACTTTGCAAAAGATGCTTGAATGGTGGTTCATTCCTATGAACATTGTGTTAAGCTCAGTAGCAGGCTCACTTATTGGCTTTATTGTGGCACTATTAGTTCAACCACCAAAGGATTACTTCAAATTCACAATCGTGCAAATTGGAATTGGGAACATTGGGAATGTGCCTATGGTATTGATTGGTGCAGTTTGCGGAGATAGGAACAATCCTTTTGGTGATTCTGAAATATGCAATCAAATGGGAAATGCGTATATATCATTTGGTCAATGGGTTGGTGCGGTGATTACATACACCTATGTATTCCATATGCTTGCACCTCCTCCAGCAAGCAACGTGAAAGGAAGTCTTGAATCTGAAGCTGGCACGAATAAAATTGATATAGACACCACTGACTCTGCAAGAGTACCCTTGCTTGCAGCCGAGGAAGGAGTTGTTGACAATAAGCTAAAACCACTGGATTGGCGCTCAAGGGCAATGAAGGTCATTGCTCAAGCATCTTTGCTTTTGGAACGCTTGAAAATAAAGCAACTACTTCAACCACCGATAATAGCTTCAGTCCTTGCACTGGTCATTGGCGTTATTCCATTTTTGAAGCAATTAATCATGACTGACGATGCTCCTCTTTTCTTTGTTACTGACAGCTGCATCATCCTTGGCGGTGCTATGGTTCCCTGCATAATGCTGGCGCTAGGTGGCAACCTCACTGGAGGTCCAGGTAATTCGAAGCTTGGGCTGCGGACAACTGTAGCGATCGTAATTGCTCGATTATTCTTAGTGCCTCCAGTTGGTCTTGGAATCGTTACTCTAGCAGATAAATTAGGCTTCATACCTGCTGGTAACAAAATGTTGCGATTTGTTCTGCTACTCCAGCACACAATGCCCACCTCTATTCTTTCAGGGGCGGTTGCCAATTTAAGAGGGTTTGCGGAGAAGGAAGCAACAGCAATTTTATTTTGGGTTCACATTGTGGCAATGTTTTCTATGACTCTTTGGATCACTTTGTATCTAAATATATTATTTTGACAGCAAAGCATTTTGGGTCCGTGGCAATGTCTTCTATGACCCTTTGGGTTTCTTTGTATCTAAATATATTATTTTGAGAGCAAATCAACTTTCCACGACTGACCAAGCCAAACCTGAAAGTTGGCTGTTATGTATCATGAACGATTGGCAATGCAGTCTCTGAAATCCTAACATCATCATATTCCAGTTATTTCTTGCTAGCGAGAAATGTATTCGTCATTTGATGTCAGGAATGGCCACAAATATGCATCAAAGGCGCTTGTTCTGGAACAAAACACACAAAAAAATAAAGGCATCAGTTATCACCATCATATGTATCACTTTGTTTAGACCTACTTTTTTGTTAATAACATTGAAATTC

Ace file of the UniGene sp_v1.1_unigene19433

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Auxin efflux carrier component, auxin transport protein n=2 Tax=Populus trichocarpa RepID=B9IGX9_POPTR	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	protein	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	auxin polar transport	GO:0009926	Biological Process	73%
Blast2go	auxin:hydrogen symporter activity	GO:0009672	Molecular Function	73%
Blast2go	membrane	GO:0016020	Cellular Component	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Auxin efflux carrier	IPR004776	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PTN6

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 412 - 452

Fln protein: MAIAEQNESILAMLKFSALPIVKVFLMCSLGCLMASKYVNILTPAGRKLLNGLVFTLFLPCLIFTQLGRAVTLQKMLEWWFIPMNIVLSSVAGSLIGFIVALLVQPPKDYFKFTIVQIGIGNIGNVPMVLIGAVCGDRNNPFGDSEICNQMGNAYISFGQWVGAVITYTYVFHMLAPPPASNVKGSLESEAGTNKIDIDTTDSARVPLLAAEEGVVDNKLKPLDWRSRAMKVIAQASLLLERLKIKQLLQPPIIASVLALVIGVIPFLKQLIMTDDAPLFFVTDSCIILGGAMVPCIMLALGGNLTGGPGNSKLGLRTTVAIVIARLFLVPPVGLGIVTLADKLGFIPAGNKMLRFVLLLQHTMPTSILSGAVANLRGFAEKEATAILFWVHIVAMFSMTLWITLYLNILF*

Protein Length: 413

Fln nts: CGTCGTGACCTTGGCCGTCGTGACCTTGGCTGTCACTCAATTCCACTGAGTTTTGACAGTGTGACTGAACGTCTTTAATTCTTCTGTTATTGCTTTCTCAAGTCCCGCAGTGGCTTTTGCTGTTCCACGCTCTTTTGAGCCTAGTTTTGGCCTCTTTTGCTTAATTGCCTTATGTGCCGTGGATTCCTTTTCTTCGTTTGTAAATTGAAACATTTATGTAGATTTACACTGCTTTTCGAACCCTGAACAACGGCGTTCTGTATAAAGCCTATTTGAGTAAATGGGGGATTATGCTTTAAATTGAGGGAGGGTTTGTTAGGGGCCGGATATGCTTTGTATGTTTATGTTGACTCGTTTAAGCATTTTGTGATTTTCTTGCTTCAAGATTTACCCTCCTATTTTGATGCTTTGTGTTTACTGTATACGAAGATTTTGAATTCCCGATTCCAATTAGTTTTTGTGCCAATTGAGGAGAATCCAGAGCTTAGTTTTTTGGGGGATTGGACCTAGATCGGTTTGGTTATTTCCCGTAAGCAGTTAAGTTTACCAAGAAGAACTGTCGTGATTCGCTAATCTAGTTCTTTTCCGCTAAAAGTTTGGGAAATTGTGTCGGGCGTCCCCTTCGGCTGGTTCCTATTTTTATCCATGCTACAATGATAGAGCCGGTTCTTTCTCTCGTTTAAAACGGCTTTAACAAATCCCCTCGTTGCTCAAAGTTGGTGGACTTTCCCTGGTTCTGGTAGGCCGGACTGAATCAGGAAAGGTTCAGAAATATTTGAGGCTTCCTTTTGATGTTGGTTTAATAATTTAACTTTATATAAATATACAAGGATCAGAAAGCTAGTAGGGACTTTGACAGGCGAAAGCA_-_ATGGCGATTGCGGAGCAGAACGAATCGATCCTTGCGATGTTAAAGTTTTCTGCTCTACCAATCGTAAAGGTGTTTTTGATGTGCTCTCTTGGCTGTCTCATGGCGTCCAAGTATGTCAACATTCTTACGCCTGCTGGACGGAAGCTTTTGAACGGGCTTGTATTCACTCTCTTTCTTCCATGTCTAATCTTCACACAATTGGGGAGGGCTGTGACTTTGCAAAAGATGCTTGAATGGTGGTTCATTCCTATGAACATTGTGTTAAGCTCAGTAGCAGGCTCACTTATTGGCTTTATTGTGGCACTATTAGTTCAACCACCAAAGGATTACTTCAAATTCACAATCGTGCAAATTGGAATTGGGAACATTGGGAATGTGCCTATGGTATTGATTGGTGCAGTTTGCGGAGATAGGAACAATCCTTTTGGTGATTCTGAAATATGCAATCAAATGGGAAATGCGTATATATCATTTGGTCAATGGGTTGGTGCGGTGATTACATACACCTATGTATTCCATATGCTTGCACCTCCTCCAGCAAGCAACGTGAAAGGAAGTCTTGAATCTGAAGCTGGCACGAATAAAATTGATATAGACACCACTGACTCTGCAAGAGTACCCTTGCTTGCAGCCGAGGAAGGAGTTGTTGACAATAAGCTAAAACCACTGGATTGGCGCTCAAGGGCAATGAAGGTCATTGCTCAAGCATCTTTGCTTTTGGAACGCTTGAAAATAAAGCAACTACTTCAACCACCGATAATAGCTTCAGTCCTTGCACTGGTCATTGGCGTTATTCCATTTTTGAAGCAATTAATCATGACTGACGATGCTCCTCTTTTCTTTGTTACTGACAGCTGCATCATCCTTGGCGGTGCTATGGTTCCCTGCATAATGCTGGCGCTAGGTGGCAACCTCACTGGAGGTCCAGGTAATTCGAAGCTTGGGCTGCGGACAACTGTAGCGATCGTAATTGCTCGATTATTCTTAGTGCCTCCAGTTGGTCTTGGAATCGTTACTCTAGCAGATAAATTAGGCTTCATACCTGCTGGTAACAAAATGTTGCGATTTGTTCTGCTACTCCAGCACACAATGCCCACCTCTATTCTTTCAGGGGCGGTTGCCAATTTAAGAGGGTTTGCGGAGAAGGAAGCAACAGCAATTTTATTTTGGGTTCACATTGTGGCAATGTTTTCTATGACTCTTTGGATCACTTTGTATCTAAATATATTATTTTGACAGCAAAGCATTTTGGGTCCGTGGCAATGTCTTCTATGACCCTTTGGGTTTCTTTGTATCTAAATATATTATTTTGAGAGCAAATCAACTTTCCACGACTGACCAAGCCAAACCTGAAAGTTGGCTGTTATGTATCATGAACGATTGGCAATGCAGTCTCTGAAATCCTAACATCATCATATTCCAGTTATTTCTTGCTAGCGAGAAATGTATTCGTCATTTGATGTCAGGAATGGCCACAAATATGCATCAAAGGCGCTTGTTCTGGAACAAAACACACAAAAAAATAAAGGCATCAGTTATCACCATCATATGTATCACTTTGTTTAGACCTACTTTTTTGTTAATAACATTGAAATTC

Fln Alignment:

sp_v1.1_unigene19433___SALPIVKVFLMCSLGCLMASKYVNILTPAGRKLLNGLVFTLFLPCLIFTQLGRAVTLQKMLEWWFIPMNIVLSSVAGSLIGFIVALLVQPPKDYFKFTIVQXXXXXXXXVPMVLIGAVCGDRNNPFGDSEICNQMGNAYISFGQWVGAVITYTYVFHMLAPP----------------PASNVKGSLESEAGTNKIDIDTTDSARVPLLA----AEEGVVDNKLKPLDWRSRAM----------------KVIAQASXXXXXXXXXXXXXPPIIASVLALVIGVIPFLKQLIMTDDAPLFFVTDSCIILGGAMVPCIMLALGGNLTGGPGNSKLGLRTTVAIVIARLFLVPPVGLGIVTLADKLGFIPAGNKMLRFVLLLQHTMPTSILSGAVANLRGFAEKEATAILFWVHIVAMFSMTLWITLYLNI
C0PTN6_______________SVVPLLKLLCLSSIGLVLAHPKINLISKETFKLLSKLVFALFLPCLIFTELGKSVTLKNMREWWFIPANVILSTAIGCILGYLVALICRPPPQYFRFTVVMTGFGNTGNLPLAIVGSICHSSDQPFGQH--CNTTGVAYISFAQWVAVILVYTFVYHMLEPPEEFYEIVPEDSEIEREPIGDASRPLLFEAEWPGMHHKETEHCKTPFIARIFRSMSGSTEPNLSELDHYVEGNIEGGGSPKSVRCLNEPKVVRKIRIVAERTPIQHILQPPTIASLLAIIVGMVPQLRSVLFDEDAPLSFFTDSLEIVAAAMVPSVMLVLGGLLAEGPDKSELGMRTTIGIIFTRLLLLPLVGIGVVALAGKLDIIVSGDKMFVFVLLLQYTTPSAILLGAMTNLRGYGTKETSALLFWQHIFAVVSLSFYVTIYFKL

SNPs (tot: 65)

Position	A %	C %	G %	T %	Probability
16		80		20	0.995493
21		33	66		1.0
22			16	83	0.994512
23		16	83		0.994512
24	83	16			0.994512
25		66	33		1.0
30		33	66		1.0
32		66	16	16	0.988813
38		66	33		1.0
45		83	16		0.994512
46		83		16	0.994512
47	83			16	0.994512
396			11	88	0.923564
400	88		11		0.923564
401		11		88	0.923564
402	11			88	0.923564
403			11	88	0.923564
409	11	88			0.923564
410		11		88	0.923564
411	11			88	0.923564
412			11	88	0.923564
414		11		88	0.923564
415		11	88		0.923564
763	88		11		0.923564
802		11		88	0.923564
804		11	88		0.923564
805	11			88	0.923564
806			11	88	0.923564
808	88		11		0.923564
811	88		11		0.923564
813		11		88	0.923564
814	11			88	0.923564
815			11	88	0.923564
816	88		11		0.923564
817	88	11			0.923564
946			90	10	0.90298
952			88	11	0.923564
1124	87		12		0.992554
1126		12	87		0.992554
1128	87	12			0.992554
1177	85			14	0.993533
1179			12	87	0.992554
1180	87	12			0.992554
1213		83		16	0.994512
1288	80		20		0.995493
1324	87	12			0.992554
1325	87		12		0.992554
1327		12	87		0.992554
1331	87	12			0.992554
1332	87	12			0.992554
1334			87	12	0.992554
1335		87	12		0.992554
1338	87		12		0.992554
1340	87	12			0.992554
1341	12			87	0.992554
1342	87	12			0.992554
1507		20		80	0.995493
1663		83		16	0.994512
1741		10		90	0.90298
1888		10		90	0.90298
1936		90	10		0.90298
1965		11		88	0.923564
2055		80		20	0.995493
2301	13			86	0.999973
2416		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain