SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19420

Length: 2825 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene19420
CGTCGTGACCTTGGCTGTCACTCAATTTTTTTGTACGAAGATTCCTGCAGATAGAGGAGGGCAAGTGTCGCTCTGAGAAGAAGCAGACATTAGGCCCGTGGGCCGGTGAGGGGGCCACTGATGCCTTTATTGCCCAATTCCAAGCCTATCTTCAGAATCCCTTGCCATTGGCCCCCTGCCCACTGACTCTCTTCTTCTTCCTCCTCCGGTTGCAAGTTGTTCCTCTCTATTAACCACTGTCTGTTGTTGGCTTCCGATGAGCACTCTAGGATTCTAAGACAGTGTCTGTTTCTTGCAGTCTGTTTCGTGTTCTTCGATTTTGATATTTTAGTACGTGGGTCTCTTGTAGCTTGATTTGGATTCTCCGATTTTGATAAAATATGATTGTGGGTTTCTTGTAGTTTGATTTGGGTTCTCTGATTTTCATAACATATGACGTGGGTTTCTTCTTGTCTGATTTGGGTCTCTGATTTTGATAATATATGATGTGGGTCTCTTGAAGATTGATTTGGGTTCTCTGGTTTTGATAGTTTATGAGGTGGGTAGCTTGTAGCTTGATTTGGGATCTCTGAGTTTGATAATTCTAATCTGTATTTTGATTGGTGCTAAGTGGTTTTCTGTTTGAGGATTCATTTGGGCTTTGTTTTTGAAGCAAATGATGCCGTTGAGGGCCATGAGTACAAAACATACTGATGTTGGATAGCAGTTGCTACACAGTTGAATTCCCTTGAGATCTTTGGATGGTTTTAGAAGATCCGTTCAGTCGATGGCCAGGGTCTTTTTTTTTCAGTCATTGGCCTTATGTATCCTATGGTTGGGCTAAACAGGTAGCGGGTCTGTAGATTTACAGTATTTAAGACGAGTGCTATATTTTCTCTGTAATAGAAAGGATATCAGGGAGATTTTGAGGATAAAAGACAAGCTTACTTCTTCTCAACATGGTCTTTATAATCAAAGATTCTTACTGGACCTCTTGTGAACAAAGGACTGAAGAATTTATTGAGAAAAATCTTAGAAGGCAAGAAAGCTGGTGTGATGATGATTATACTTGTTTTCTTTAGGACAGGATATTTAATGAGATACGTTTCCATTGAATGAGGTTGGAGTGTGCCAACTTCTCACAAGTTACTGTTTCTGTCTAGTATGAATCTTGAACGGCTTTTATTTTCCCATGGCAAAAGAGAATACTGCACTGAAAAAAATCGGGGACCGTTCCACCAGTGATGTAATTGTGAGATTGAGGACAACCGATGGCAGAGACGACTGGTTTTACTGCCATTCAGAAATTTTAGTAAAACAAAGCAAATATTTTGCGGAGCGTCTTTCAGATGACTGGCCCATATGCCAATTTCTGGATTCTCGGAATTGTATAGAAGTTTACTGTTGTGAATCTGACTATGATCATCATGTGAACATTTTGAGGCTTTTTTATGTGGAGAGCAATCTGGTTACAGATTTGTGGCAGAATGTAAAAATGGCTCTTGGCATTTTGAAAGTAGCCACCAAACTCGGTAGTGATCGAATAATTTCAAAGTGTGTTCAGTATTTAGAAGCAGTGCCCTGGGAGGAACAGGAAGAGGAAGAAATTATAACAACGCTTCCAAACCTAGGTTCAGAAGTCATTCCCATCCTTGCTAGACTTCAACCAGTTGACTCAGATGCGGTAAGAAACGTGTTTCTCTCTGCAATACATGCTGCAATTCAAGTTGACAGTAAACGTTCTGATTTGCCAGCGTCACCAGACGAACTCAAAGCATCTGCACAAGAGCAGGTAGAGTATATGCTCGTTGAAGATGATGATGCACCTCTTCTTGCAGTAGATGACAGTGTAAAGTATGAAGTAAAAAAGCATCTATCAGAGTTGTTTTCCATTTTTGAAAAGAAAATGGCAGCTCTGTTATCTGATACGGAAGATGTCGTAGAGGACCACGAAAATCACATTTTAAGGTGTTTGGCCGACTTCTTATGGTTGTGTCACATTTTGCCTAAGATGGATCTTTTAACTGAATTTGTCAGCAAGTGGGCAGAAGCTTCAGACAACATTCTTTACATAGTCAAGGATATAAGATTTAGTTCATGTCTATGGGAGACAAAATTGAAATTGATTGAAATTACAGGAAAGGTTTTGGAGGCGGTTGGGTATGGCAATGTAATCCTTTCTGCTCCAAGGCGAACACATCTGGTGAAACTTTGGTTACCCTTTATAAGAGAGACAAAGCCACAACTTGACCTACAAAATTTTTATGAGAAAATGCCTTGCCAGATGGATAACGATCTCTGTCAAAGCATAGAATCTGCGCTCATTTCCCTGGTTCTGGCATTGCCTTCTAGTGATCAGGCTGAAATTTTGGCTGACTGGCTGAAAACAGAGCAAGCAAGATACCCAGATTTAAGTGAAGCTTTTGAAGTGTGGTGTTACAGATCCAAAGCAGCAAAGAGGAGACTGTCTTTGGGTTTGAATGGTGTTAGTACTAGCAGTACCTCTACTGTTACCGATGTTGGCCATTAATATATTTGGCTTAAAACAGCGCAAGCAAGAGATCCAGCTTTAAGTGAAGCTTTTGAAGTGTGGTGTTAGAGGGGGAGGGCAGCAAAGAGGAGACTGTCTTTGGATCTAAATGGCGTTAGTAGTACCTCCACAGCGTGCAATATTGGTCATTAATGTAATTGTAAGTCCTTTGCACATGTATCTCATGTTGTAATATGTATATTTAACAGTCTTGCTGTTACTCTGTTACTTTTAGCTCAGACAGGTTGTATTTGATGCTATTAACCACCCCGGGATGGTTAACAAATCCAATGTTGGAAGCCATTTTCATTATATC

Ace file of the UniGene sp_v1.1_unigene19420

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein binding protein, putative	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein binding	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	BTB/POZ fold	IPR011333	-	0.0	69%
Blast2go	BTB/POZ	IPR013069	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR46

Fln msg:

Fln protein: MAKENTALKKIGDRSTSDVIVRLRTTDGRDDWFYCHSEILVKQSKYFAERLSDDWPICQFLDSRNCIEVYCCESDYDHHVNILRLFYVESNLVTDLWQNVKMALGILKVATKLGSDRIISKCVQYLEAVPWEEQEEEEIITTLPNLGSEVIPILARLQPVDSDAVRNVFLSAIHAAIQVDSKRSDLPASPDELKASAQEQVEYMLVEDDDAPLLAVDDSVKYEVKKHLSELFSIFEKKMAALLSDTEDVVEDHENHILRCLADFLWLCHILPKMDLLTEFVSKWAEASDNILYIVKDIRFSSCLWETKLKLIEITGKVLEAVGYGNVILSAPRRTHLVKLWLPFIRETKPQLDLQNFYEKMPCQMDNDLCQSIESALISLVLALPSSDQAEILADWLKTEQARYPDLSEAFEVWCYRSKAAKRRLSLGLNGVSTSSTSTVTDVGH*

Protein Length: 447

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTTTGTACGAAGATTCCTGCAGATAGAGGAGGGCAAGTGTCGCTCTGAGAAGAAGCAGACATTAGGCCCGTGGGCCGGTGAGGGGGCCACTGATGCCTTTATTGCCCAATTCCAAGCCTATCTTCAGAATCCCTTGCCATTGGCCCCCTGCCCACTGACTCTCTTCTTCTTCCTCCTCCGGTTGCAAGTTGTTCCTCTCTATTAACCACTGTCTGTTGTTGGCTTCCGATGAGCACTCTAGGATTCTAAGACAGTGTCTGTTTCTTGCAGTCTGTTTCGTGTTCTTCGATTTTGATATTTTAGTACGTGGGTCTCTTGTAGCTTGATTTGGATTCTCCGATTTTGATAAAATATGATTGTGGGTTTCTTGTAGTTTGATTTGGGTTCTCTGATTTTCATAACATATGACGTGGGTTTCTTCTTGTCTGATTTGGGTCTCTGATTTTGATAATATATGATGTGGGTCTCTTGAAGATTGATTTGGGTTCTCTGGTTTTGATAGTTTATGAGGTGGGTAGCTTGTAGCTTGATTTGGGATCTCTGAGTTTGATAATTCTAATCTGTATTTTGATTGGTGCTAAGTGGTTTTCTGTTTGAGGATTCATTTGGGCTTTGTTTTTGAAGCAAATGATGCCGTTGAGGGCCATGAGTACAAAACATACTGATGTTGGATAGCAGTTGCTACACAGTTGAATTCCCTTGAGATCTTTGGATGGTTTTAGAAGATCCGTTCAGTCGATGGCCAGGGTCTTTTTTTTTCAGTCATTGGCCTTATGTATCCTATGGTTGGGCTAAACAGGTAGCGGGTCTGTAGATTTACAGTATTTAAGACGAGTGCTATATTTTCTCTGTAATAGAAAGGATATCAGGGAGATTTTGAGGATAAAAGACAAGCTTACTTCTTCTCAACATGGTCTTTATAATCAAAGATTCTTACTGGACCTCTTGTGAACAAAGGACTGAAGAATTTATTGAGAAAAATCTTAGAAGGCAAGAAAGCTGGTGTGATGATGATTATACTTGTTTTCTTTAGGACAGGATATTTAATGAGATACGTTTCCATTGAATGAGGTTGGAGTGTGCCAACTTCTCACAAGTTACTGTTTCTGTCTAGTATGAATCTTGAACGGCTTTTATTTTCCC_-_ATGGCAAAAGAGAATACTGCACTGAAAAAAATCGGGGACCGTTCCACCAGTGATGTAATTGTGAGATTGAGGACAACCGATGGCAGAGACGACTGGTTTTACTGCCATTCAGAAATTTTAGTAAAACAAAGCAAATATTTTGCGGAGCGTCTTTCAGATGACTGGCCCATATGCCAATTTCTGGATTCTCGGAATTGTATAGAAGTTTACTGTTGTGAATCTGACTATGATCATCATGTGAACATTTTGAGGCTTTTTTATGTGGAGAGCAATCTGGTTACAGATTTGTGGCAGAATGTAAAAATGGCTCTTGGCATTTTGAAAGTAGCCACCAAACTCGGTAGTGATCGAATAATTTCAAAGTGTGTTCAGTATTTAGAAGCAGTGCCCTGGGAGGAACAGGAAGAGGAAGAAATTATAACAACGCTTCCAAACCTAGGTTCAGAAGTCATTCCCATCCTTGCTAGACTTCAACCAGTTGACTCAGATGCGGTAAGAAACGTGTTTCTCTCTGCAATACATGCTGCAATTCAAGTTGACAGTAAACGTTCTGATTTGCCAGCGTCACCAGACGAACTCAAAGCATCTGCACAAGAGCAGGTAGAGTATATGCTCGTTGAAGATGATGATGCACCTCTTCTTGCAGTAGATGACAGTGTAAAGTATGAAGTAAAAAAGCATCTATCAGAGTTGTTTTCCATTTTTGAAAAGAAAATGGCAGCTCTGTTATCTGATACGGAAGATGTCGTAGAGGACCACGAAAATCACATTTTAAGGTGTTTGGCCGACTTCTTATGGTTGTGTCACATTTTGCCTAAGATGGATCTTTTAACTGAATTTGTCAGCAAGTGGGCAGAAGCTTCAGACAACATTCTTTACATAGTCAAGGATATAAGATTTAGTTCATGTCTATGGGAGACAAAATTGAAATTGATTGAAATTACAGGAAAGGTTTTGGAGGCGGTTGGGTATGGCAATGTAATCCTTTCTGCTCCAAGGCGAACACATCTGGTGAAACTTTGGTTACCCTTTATAAGAGAGACAAAGCCACAACTTGACCTACAAAATTTTTATGAGAAAATGCCTTGCCAGATGGATAACGATCTCTGTCAAAGCATAGAATCTGCGCTCATTTCCCTGGTTCTGGCATTGCCTTCTAGTGATCAGGCTGAAATTTTGGCTGACTGGCTGAAAACAGAGCAAGCAAGATACCCAGATTTAAGTGAAGCTTTTGAAGTGTGGTGTTACAGATCCAAAGCAGCAAAGAGGAGACTGTCTTTGGGTTTGAATGGTGTTAGTACTAGCAGTACCTCTACTGTTACCGATGTTGGCCATTAA___TATATTTGGCTTAAAACAGCGCAAGCAAGAGATCCAGCTTTAAGTGAAGCTTTTGAAGTGTGGTGTTAGAGGGGGAGGGCAGCAAAGAGGAGACTGTCTTTGGATCTAAATGGCGTTAGTAGTACCTCCACAGCGTGCAATATTGGTCATTAATGTAATTGTAAGTCCTTTGCACATGTATCTCATGTTGTAATATGTATATTTAACAGTCTTGCTGTTACTCTGTTACTTTTAGCTCAGACAGGTTGTATTTGATGCTATTAACCACCCCGGGATGGTTAACAAATCCAATGTTGGAAGCCATTTTCATTATATC

Fln Alignment:

sp_v1.1_unigene19420___MAKENTALKKIGDRSTSDVIVRLRTTDGRDDWFYCHSEILVKQSKYFAERLSDDWPICQFLDSRNCIEVYCCESDYDHHVNILRLFYVESNLVTDLWQNVKMALGILKVATKLGSDRIISKCVQYLEAVPWXXXXXXXIITTLPNLGSEVIPILARLQPVDSDAVRNVFLSAIHAAIQVDSKRSDLPASPDELKASAQEQVEYMLVEDDDAPLLAVDDSVKYEVKKHLSELFSIFEKKMAALLSDTEDVVEDHENHILRCLADFLWLCHILPKMDLLTEFVSKWAEASDNILYIVKDIRFSSCLWETKLKLIEITGKVLEAVGYGNVILSAPRRTHLVKLWLPFIRETKPQLDLQNFYEKMPCQMDNDLCQSIESALISLVLALPSSDQAEILADWLKTEQARYPDLSEAFEVWCYRSKAAKRRLSLGLNGXXXXXXXXXXDVGH
B8LR46_______________MAKENTALKKIGDRSTSDVIVRLRTSDGRDDWFYCHSEILVKQSKYFAERLSDDWPICQFLDSRNCIEVYCYESDYDNHVNILRLFYLDNNLVTDLWQNVKMALGILKVATKLGSDQIISKCVQYLEAVPWEEHEEEEIIRTLPNLGSEVVPILARLQPVDSDAVRNVFLSAIHAAIQVDSKRSDLPASPDELKASAQEQVEYMLVEDDDAPLLAVDDNVKYEVKKHLSELFAIFEKKMASLLSDTEDVLEDHENHILKFLADFLWLCHILPKMDLLTDFVSKWTEASDNLLYIVKDIRFRSCLWETKLKMIEITGKVLEAVGYGNVIFSAPRRTHLVKLWLPFIRETKPQLDLQNFYEKMPYQMDNDLCQSIESALISLVLALPSSDQAEILADWLKTEQARYPDLSEAFEVWCYRSKAAKRRLSLGLNGVSSSSTSTVSDVGH

SNPs (tot: 60)

Position	A %	C %	G %	T %	Probability
157	66		33		0.997452
158	66		33		0.997452
159			33	66	0.997452
228	12	87			0.992554
230	87		12		0.992554
231			12	87	0.992554
232			12	87	0.992554
261	87		12		0.992554
269	80	20			0.999996
274		22		77	0.999999
278	77			22	0.999999
280	77		22		0.999999
282	77			22	0.999999
285		22	77		0.999999
286	11			88	0.923564
288		11		88	0.923564
289	11		88		0.923564
319		12		87	0.992554
320		12		87	0.992554
321			12	87	0.992554
325		12		87	0.992554
326	87	12			0.992554
329			12	87	0.992554
330		12		87	0.992554
331	87			12	0.992554
339		12	87		0.992554
340	12		87		0.992554
371		20		80	0.999996
372			20	80	0.999996
376		20		80	0.999996
377	70	20			0.999998
378	80			20	0.999996
379	80			20	0.999996
380	80		20		0.999996
381			20	80	0.999996
382	80	20			0.999996
385	80			20	0.999996
386		20		80	0.999996
387	20			80	0.999996
388		20	80		0.999996
390		20	80		0.999996
391	20		80		0.999996
1777	90		9		0.999842
1922	85	14			0.993533
1924	85			14	0.993533
1930	85			14	0.993533
1931		85		14	0.993533
1933	85		14		0.993533
1934	85	14			0.993533
1935	85			14	0.993533
1936	85		14		0.993533
1941	83			16	0.994512
1942		20		80	0.995493
2027	87		12		0.992554
2051		88		11	0.923564
2069	85		14		0.993533
2148	88		11		0.923564
2169	87			12	0.992554
2172		87	12		0.992554
2182		11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain