SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19417

Length: 476 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene19417
CGTCGTGACCTTGGCTGTCACTCAATTTTGTCGAATTAACAGACCCAGCATCTATATATACCATGAAAACCCAGTCCCAGTCCTTTCCATTCTGTCCATCTGCTAATTCCCTTCCCTGCACACAAATTTATTTTCTTTTTTCCTCGTGTGTTGAATCCAGAATTCCACAGAGCAATGGGTCTCCAGATCGATCCCCGCAGCAGCTACAACCAGACGTACTACAGCAATCGAAAATCCGTACTACAGAAATCGAAAACCAGTGGATTTTCCCCAAGACGAATTCCTGGATCTCCCCACCTACGTCTCCTCGCTTCGCCACAATGACCGCATAGCCTTCATCGACTCTGTCACTGGGAAAACCACCACATTTCCTCAACTATGGCAGAGCGTAAAGTCACTTGCCGCTGGTTTAGCCGGCCTTGGCATCAGAAAATCCGACGTTGTACTCATCCTTTCGGCGAATTCAATGTATTTCC

Ace file of the UniGene sp_v1.1_unigene19417

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ptr4CL20; acyl:coa ligase	-	-	2.0e-14	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	acyl:coa ligase	-	-	1.39929e-15	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	4-coumarate--CoA ligase.	EC:6.2.1.12	-	1.39929e-15	69%

Source	KEGGs	Term	e value	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	1.39929e-15	69%
Blast2go	Phenylalanine metabolism	00360	1.39929e-15	69%
Blast2go	Phenylpropanoid biosynthesis	00940	1.39929e-15	69%
Blast2go	Biosynthesis of phenylpropanoids	01061	1.39929e-15	69%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	1.39929e-15	69%
Blast2go	Metabolic pathways	01100	1.39929e-15	69%
Blast2go	Biosynthesis of secondary metabolites	01110	1.39929e-15	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	jasmonic acid biosynthetic process	GO:0009695	Biological Process	1.39929e-15	69%
Blast2go	response to wounding	GO:0009611	Biological Process	1.39929e-15	69%
Blast2go	phenylpropanoid metabolic process	GO:0009698	Biological Process	1.39929e-15	69%
Blast2go	4-coumarate-CoA ligase activity	GO:0016207	Molecular Function	1.39929e-15	69%
Blast2go	peroxisome	GO:0005777	Cellular Component	1.39929e-15	69%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP93

Fln msg: Distance to subject end: 442 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 107 - 548

Fln protein: IQNSTEQWVSRSIPAAATTRRTTAIENPYYRNRKPVDFPQDEFLDLPTYVSSLRHNDRIAFIDSVTGKTTTFPQLWQSVKSLAAGLAGLGIRKSDVVLILSANSMYF

Protein Length: 108

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTGTCGAATTAACAGACCCAGCATCTATATATACCATGAAAACCCAGTCCCAGTCCTTTCCATTCTGTCCATCTGCTAATTCCCTTCCCTGCACACAAATTTATTTTCTTTTTTCCTCGTGTGTTGAATCCAGAATTCCACAGAGCAATGGGTCTCCAGATCGATCCCCGCAGCAGCTACAACCAGACGTACTACAGCAATCGAAAATCCGTACTACAGAAATCGAAAACCAGTGGATTTTCCCCAAGACGAATTCCTGGATCTCCCCACCTACGTCTCCTCGCTTCGCCACAATGACCGCATAGCCTTCATCGACTCTGTCACTGGGAAAACCACCACATTTCCTCAACTATGGCAGAGCGTAAAGTCACTTGCCGCTGGTTTAGCCGGCCTTGGCATCAGAAAATCCGACGTTGTACTCATCCTTTCGGCGAATTCAATGTATTTCC

Fln Alignment:

sp_v1.1_unigene19417___YYRNRKPVDFPQDEF-LDLPTYVSSLRHN-DRIAFIDSVTGKTTTFPQLWQSVKSLAAGLAGLGIRKSDVVLILSANSM
B8LP93_______________YYSKREPVLLPPPHHPLDVITYIFSLQHNMQQIAFIDGPSGTTLTYSALRLKVRALAAGLHGLGIRKGDVVLVISSNSI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain