SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19404

Length: 1616 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19404

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reticulon multi-domain protein	-	-	4.0e-22	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	26%
Blast2go	protein	-	-	0.0	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	61%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Reticulon	IPR003388	-	0.0	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0W4

Fln msg: No stop codon before M and M found is too far from subject M,

Fln protein: MADLIMWKDTPKSALMFGLGSFCVISSSFTQDLHFSLVTFVSYLALVYLAAVFFYKNILQRGLEQDSSLVNYEAISEAYALSIIRLVLPFVNGLLAKLRELFSGDPATTMKLASIIWLLAQCGQKMTIWTLAKLSFFAIFTIPKLYACYSVQLHRYGHFMLCRFWDAWNTCSHKKGVLVAVFLLVWNLSTVTARVWGAFILIVALRLYQQSVITNLDNQNVDPSQESIQISEIRASEASKLELMKTQ*

Protein Length: 249

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGATTCCCGTCTGCTTGCTGCGATTCACCTTTCTGAACTTGTGCCTTTTGATCCTCAGCCTAATCCTTCAAGTCCTCATGTCTTTCCTGATCCTGTGGATCCTCAGCCTAATCCTCCAATTCCTCACATATTTCCTGATCCTGTAGATCCTCAGCCTAATCCTCCAGCATCCCTTGATTTTCCTGAACCTGTCGATGATCAACCTAATTCTGCAATTACACATTCTATTTCTCCTAAGTCTACTGATCGCCATCAGAAAATTTACAAAGAAACAAGCCTTCCAGCTCCAGTGCCTACTAAGAATTTACCTTCCTTACAAAGGAGATCAAGGAGAATATATACTGAATCCTCGGAAGGTCCTGACAGGATCCAATATATGGCTGATTTGATCATGTGGAAGGATACTCCGAAATCAGCATTAATGTTTGGACTCGGCTCGTTTTGTGTCATATCTTCATCCTTTACCCAGGACTTGCATTTCAGCTTGGTTACCTTTGTATCATACTTAGCCCTTGTATACCTGGCTGCAGTTTTCTTCTACAAGAACATTTTGCAAAGGGGACTTGAACAAGACAGCAGCCTTGTAAATTATGAAGCAATTAGTGAGGCCTATGCACTTTCTATCATTAGATTGGTGCTTCCATTTGTCAATGGATTGCTTGCTAAGCTCCGAGAACTCTTTTCAGGCGATCCAGCTACCACTATGAAGTTGGCATCTATTATTTGGTTGCTTGCACAGTGTGGGCAGAAAATGACCATATGGACTCTAGCAAAGCTTTCATTCTTTGCCATCTTTACTATACCAAAACTCTATGCATGCTACTCTGTTCAGTTGCACAGATATGGTCATTTCATGCTATGTCGGTTTTGGGATGCATGGAATACCTGCTCCCACAAGAAAGGAGTGCTGGTTGCAGTTTTTCTTTTGGTTTGGAATTTATCTACTGTCACAGCCCGAGTTTGGGGAGCATTTATTTTGATTGTAGCTCTTCGTCTCTACCAGCAATCTGTAATAACAAACCTAGACAACCAAAATGTGGATCCCTCACAGGAAAGCATCCAAATTTCAGAAATTCGGGCAAGTGAAGCTTCTAAATTAGAGTTAATGAAGACACAATAA___CCAGTCTTGTAAACCACCTTTATATTTGGGTTGTTTAGAAAGCCCTTGTACAGATTGTGGCTAAAGGAGGGCTATTTGCGGTGTTTAAATGAACCTGTCTGCTTTGCTTGGATGTAAATTAAATATGTATTTGTTGTTCAAGGGGAGGAAACCTTTGCAACATTGAGAAAATGTCAAATGCTAGTTTCAGTTTTTTAATTGCTATATACTCTATAGTTCATTTTGTTCTAGGTAAAAATAGAGATTGATCTGATCGTGCAACTGGAAAATGTTGTTGTAACTATTGGCAACTCAATGAAGATGAAGCAGGCTACTAATATTTTGGACTCTTGTATCAGTTGAATTGACTTAATATCTACTTGATATTAGTCACAAGATCTAGTGCGTTCATTGAAGAAAGCAGTTACTTCAAAGTGTATATATCATAAAACTGTTTATCATGCAATGAGCACCAACTGAATTGACTTAAT

Fln Alignment:

sp_v1.1_unigene19404___ADLIMWKDTPKSALMFGLGSFCVISSSFTQDLHFSLVTFVSYLALVYLAAVFFYKNILQRGLEQDSSLVNYEAISEAYALSIIRLVLPFVNGLLAKLRELFSG-DPATTMKLASIIWLLAQCGQKMTIWTLAKLSFFAIFTIPKLYACYSVQLHRYGH
A9P0W4_______________ADLILWRDKQRSASI--LAGATVLWILF-ECMEYHFLTFVCHVLILSLAILFIWINSAAF-LKRSPPHIPEIAISEVAIHNVASELRVEVNRAFSALHEVATGRDFKKYLLVVAGLWFLSVIGSWCDFLTLAYIVLVVTLTVPVLYEKYQDQVDSFAH

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
51		66		33	1.0
52	33	33	33		1.0
53	66			33	1.0
54		33		33	1.0
55		33	33	33	1.0
57		66	33		1.0
59	16	33			1.0
64			33	66	1.0
69	66	33			1.0
73		33		66	1.0
74	33		66		1.0
901	12			87	0.992554
914	87		12		0.992554
1004	85	14			0.993533
1006		85		14	0.993533
1007	85	14			0.993533
1008			14	85	0.993533
1010			14	85	0.993533
1012		14		85	0.993533
1013		14		85	0.993533
1017	83		16		0.994512
1018		16		83	0.994512
1023		20	80		0.995493
1151	75		25		0.996473
1428	30		70		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain