SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19365

Length: 1595 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19365

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Charged multivesicular body protein 2a, putative	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	charged multivesicular body protein	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	protein transport	GO:0015031	Biological Process	90%
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	90%
Blast2go	ESCRT III complex	GO:0000815	Cellular Component	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Snf7	IPR005024	-	0.0	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ75

Fln msg:

Fln protein: MNIFKKKTTAKDALRTSKREMQVATRGIEREIASLQLEEKKLVAEIKKTAKTGNEAATKILARQLIRLRQQIANLQGSRAQVRGVATHTQAMYANTSVATGMKGASKAMAAMNKQMEPAKQAKVMQEFQRQTAQMDMTTEMISGSIDDALDNDEAEEETEELTNQVLDEIGIDIASQLSSAPKGKIAGRRAQGVGSSDVDDLEQRLAALRNA*

Protein Length: 214

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAAAGTTAAAACGTTGTGTACCTCGATTGCAAGTAGAGGAAATCCGGCACTGCACGGCGGATGAATGATCTCACGCTCCTAACGGTCACAGAGGTGGCACGGCTGCACTAATCTGCTCGTCCCACCTGATTTCTGTGCCATTGAAGAGATACCAGTGAAGCAGTGTCAAATTAGATCCGCGGATCGGCCGACGAGTAGCCAGCGACAGCGAATTATTATCAGATTCCAGTAAACAGCCCAGGAAATCGTGGTCTTCAGCTTTGTCTCTAGGGTTTGAGCTGCTTTTCGAGGGTTTGACACACAGTTCGTGTGAGTCTGTTCAACCTCTCAGCGAAACCCTCGTTTCTGGGGAGGGAATCGGTGCAACC_-_ATGAACATTTTCAAGAAAAAAACCACAGCCAAAGATGCCCTGCGGACGAGCAAGCGGGAGATGCAAGTTGCAACCAGAGGTATTGAACGAGAGATAGCATCACTGCAATTAGAGGAGAAAAAACTTGTTGCTGAGATAAAAAAGACTGCAAAAACTGGCAATGAGGCTGCCACAAAAATTTTAGCTCGCCAACTTATCAGGTTAAGACAACAAATAGCTAATTTGCAAGGTAGCCGTGCCCAAGTGCGTGGAGTGGCAACACATACACAGGCTATGTATGCAAACACCTCTGTTGCTACAGGGATGAAAGGTGCCAGTAAAGCAATGGCAGCCATGAATAAGCAAATGGAGCCAGCGAAGCAGGCTAAGGTGATGCAAGAATTTCAAAGGCAGACAGCACAAATGGATATGACGACTGAGATGATATCAGGTTCCATTGATGATGCTCTAGATAATGACGAGGCTGAAGAGGAAACCGAGGAGCTTACTAACCAGGTGCTGGATGAAATTGGAATAGATATTGCTTCCCAGTTATCATCAGCACCCAAAGGGAAGATTGCTGGAAGGAGAGCCCAAGGCGTTGGCAGTTCTGACGTGGATGACCTGGAGCAGAGGTTGGCAGCCCTTCGCAATGCCTGA___TTCGAATCCATAGATAAGAGATCGACGTTAAGTGCTATAGTTCGTTTGTATATGCAGAACCATGCTTGGATATAGATCAGTGAGGGGCATAGCATATTTGGAAACCAGTAGGAAGTCTTCTTCAAAGTGCCATTCTGTAAATGAATTTATTAATGCCATGTTTCTTTCTAAAATAACGTTTTTGTAGTAGTCTGGAATGTGATCAGCGTTAAAGCCTTAGATCCCTTATAATTGCTATATTAAGAATATCAAGTGCTACTTCAATGAGAGACTGAAAGAAGAGACATGTCAGTAGTAAATTACTGCTGAAATTATCACTTTTAACTCATTTCCATGTCATGTTCCTGTTTTCATTAGTTGAATATGTTCTGAGGTTTTACAGGTAGTCACTGTTCATGCACCTGATGAAGTTATTCCTCCAATTCAATTCATTAGCATAGCTTTTGTCGCCCTATGTACTATATAAAAGATAACAATTTAAGTGATAGATGGTCCAGTCATGTGATACTCAATTGTGACTGCTGTAGTCAGTGTTACTTCGTTTAAATTGCACAAGATAATACT

Fln Alignment:

sp_v1.1_unigene19365___MNIFKKKTTAKDALRTSKREMQVATRGIEREIASLQLEEKKLVAEIKKTAKTGNEAATKILARQLIRLRQQIANLQGSRAQVRGVATHTQAMYANTSVXXXXXXXXXXXXXXXXQMEPAKQAKVMQEFQRQTAQMDMTTEMISGSIXXXXXXXXXXXXXXXXXXQVLDEIGIDIASQLSSAPKGKIAGRRAQGVGSSDVDDLEQRLAALRNA
A9NQ75_______________MNIFKKKTTAKDALRTSKREMQVATRGIEREITSLQLEEKKLVAEIKKTAKTGNEAATKILARQLIRLRQQIANLQGSRAQVRGVATHTQAMYANTSVATGMKGASKAMAAMNKQMEPAKQAKVMQEFQRQTAQMDMTTEMISGSIDDALDNDEAEEETEELTNQVLDEIGIDIASQLSSAPKGKIAERRAQGAGSSDVADLEQRLAALRNA

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
156	16			83	0.994512
158		83	16		0.994512
159			16	83	0.994512
161			16	83	0.994512
723	85		14		0.993533
743	85			14	0.993533
1376		90		10	0.90298
1486	75			25	0.996473
1487		25		75	0.996473
1489		25		75	0.996473
1491		75	25		0.996473
1493	75		25		0.996473
1494	25			75	0.996473
1495	75		25		0.996473
1497	75		25		0.996473
1499	75	25			0.996473
1502	75		25		0.996473
1503		25		75	0.996473
1504	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain