SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19339

Length: 526 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene19339
CCTTGGTGGGATCTGCTCTGGCGGATTTGCAGGGCGACCAGAAGGCGTGCACAGATAAGCTTACTAGTTTGACTAATTGTTTTGCTTGTACAGGGCAACCAGAAAAGCCCCAGCACAGACTGTTGCACTAATCTGAAGAATGTATACCAGACAGCGCCCAAGTGTTTGTGTATTTTGGTGAAGGATAGTACTAGCCCTTCACTTGGTGTATCTATTAATCAGACCCTTGCTTTGGGGTTACCTGCTGCCTGCAAAGTGAATGCAAATATCTCTGAGTGTCCAGGTACCTTTGCTTCTTAAAAATCCCTGGCTTCTGAATTCAACCACTTTTTCTATTCTCAGTCTCTTTTTTTTGGCAGCGCTTCTCAATATTGCCCCAAATTCACCTGATGCCAAAGTTTTTGAAGCTGCCAATAAGACCCCCCCTGCTCCGCACTCCTCTGATGGATCTTCAGGGTCTTCTTCAACTGCGGCAACCACTGATTTAAGCAAGAGCATGAGTTTGAACTTAAAGCCTAAGCTTAGT

Ace file of the UniGene sp_v1.1_unigene19339

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Non-specific lipid-transfer protein n=1 Tax=Picea sitchensis RepID=A9NQ72_PICSI	-	-	1.0e-38	89%
FL-Next	sp=Non-specific lipid-transfer protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	lipid binding	-	-	2.30421e-38	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	lipid transport	GO:0006869	Biological Process	2.30421e-38	71%
Blast2go	lipid binding	GO:0008289	Molecular Function	2.30421e-38	71%
Blast2go	anchored to membrane	GO:0031225	Cellular Component	2.30421e-38	71%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	2.30421e-38	71%
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.30421e-38	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQ72

Fln msg: Separated hits, possible frame ERROR between 86 and 91, and possible frame ERROR between 282 and 377, Distance to subject end: 18 aas,

Fln protein: LVGSALADLQGDQKACTDKLTSLTNCFxxxQGNQKSPSTDCCTNLKNVYQTAPKCLCILVKDSTSPSLGVSINQTLALGLPAACKVNANISECxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAPNSPDAKVFEAANKTPPAPHSSDGSSGSSSTAATTDLSKSMSLNLKPKLS

Protein Length: 177

Fln nts: CCTTGGTGGGATCTGCTCTGGCGGATTTGCAGGGCGACCAGAAGGCGTGCACAGATAAGCTTACTAGTTTGACTAATTGTTTTGCxxxxxxACAGGGCAACCAGAAAAGCCCCAGCACAGACTGTTGCACTAATCTGAAGAATGTATACCAGACAGCGCCCAAGTGTTTGTGTATTTTGGTGAAGGATAGTACTAGCCCTTCACTTGGTGTATCTATTAATCAGACCCTTGCTTTGGGGTTACCTGCTGCCTGCAAAGTGAATGCAAATATCTCTGAGTGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCCCCAAATTCACCTGATGCCAAAGTTTTTGAAGCTGCCAATAAGACCCCCCCTGCTCCGCACTCCTCTGATGGATCTTCAGGGTCTTCTTCAACTGCGGCAACCACTGATTTAAGCAAGAGCATGAGTTTGAACTTAAAGCCTAAGCTTAGT

Fln Alignment:

sp_v1.1_unigene19339___LVGSALADLQGDQKACTDKLTSLTNCFAxxQGNQKSPSTDCCTNLKNVYQTAPKCLCILVKDSTSPSLGVSINQTLALGLPAACKVNANISECPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPNSPDAKVFEAANKTPPAPHXXXXXXXXXXXXXXXXLSKSMSLNLKPKLS
A9NQ72_______________LVGSALADLEADQKECSSQLTSMTKCFSxxQGTDKSPSTDCCANLKNVYQTAPKCLCILVKDSTSPALGLSINQTLALGLPSACKVNANISACPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPNSPDAKIFGVANSSSSA---SPSSGGSSSTGATKDSSKSMSLSLKPQLS

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
176			25	75	0.996473
177			25	75	0.996473
178			25	75	0.996473
315	20			80	0.995493
317		80	20		0.995493
318			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain