SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19331

Length: 1734 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19331

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger, RING-type [Medicago truncatula]	-	-	72%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	81%
Blast2go	protein	-	-	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	90%
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	90%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	90%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	90%
Blast2go	Zinc finger, RING-type, conserved site	IPR017907	-	90%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9SAG8

Fln msg:

Fln protein: MYLVAMGQAQGKSFKDSLKGLEADIQHANTLASEFPREYDGACLQMRLSYSPAAHLFLFLVQWTDCSLAGALGLLRILIYKVYVDGTTTMSTHERKASLREFYAVIFPSLLQLHGGITEMEDRKQKAVCMDRYKKKVDEERGQLSDIDLEREEECGICMETNSKIVLPNCSHAMCMKCYREWHARSQSCPFCRDSLKRVNSRDLWIFTDNGEVIDMATLARENLRRLFLYVEKLPLLVPESVFDVYDAHYDSHIK*

Protein Length: 257

Fln nts: TCGATGCTCTGGTGGGATTTATCTCACGGGTCTCAGCGGATTGTCATTCAAGCATTATTAGGAAAAAATAGGCCATGATGATGGTTGGTATTGGAGATTCTGAGTGCAGCAAAAGAGGGGTTGGAATGGTTTATTAGGAGGAGTTTGATGGGCTGTCAGGGGTTTTTGTTGTGGCTGCCATGGAAAGGTTAGGTTGAAGATCGGTCGGTATTGAGGGGATTTGGGAGGGTATTAATTCTGTTTACATAAGCTTTGAAGGTTAGGCCAAAGAG_-_ATGTATTTGGTGGCAATGGGTCAAGCGCAGGGGAAATCTTTCAAGGATTCTTTGAAGGGGCTTGAAGCAGACATTCAGCATGCAAATACCTTGGCATCAGAGTTTCCAAGGGAATATGACGGTGCTTGTCTTCAAATGAGATTATCTTACAGCCCAGCTGCACACTTGTTCCTTTTCCTTGTGCAGTGGACTGATTGCAGCCTAGCAGGTGCATTGGGTTTGCTACGCATATTGATATATAAGGTGTATGTAGATGGTACCACAACAATGTCTACTCATGAGAGGAAAGCTAGCCTTAGAGAATTTTATGCGGTAATATTTCCTTCTTTACTGCAACTTCATGGAGGGATAACTGAGATGGAGGATCGGAAACAGAAAGCAGTATGCATGGACAGATATAAGAAAAAAGTTGATGAAGAGAGGGGGCAATTATCTGACATTGATTTGGAGCGGGAAGAAGAATGTGGAATTTGTATGGAGACCAACAGTAAGATTGTCTTGCCAAATTGCAGTCATGCCATGTGCATGAAATGCTACCGTGAATGGCATGCACGATCACAATCATGTCCTTTTTGTCGTGATAGCTTGAAGAGAGTAAATTCAAGGGATTTATGGATATTCACTGATAATGGAGAGGTCATTGACATGGCAACGTTGGCGAGGGAAAACTTAAGAAGACTGTTTCTTTATGTTGAGAAATTGCCCCTCTTGGTTCCAGAGAGTGTGTTTGATGTTTATGATGCTCATTATGATTCTCACATCAAGTGA___ATATTTTGAAGGCTTGTTGTTGAACAGGTCATGACTGACATTTTCTCTTTCATATATACCTGTATCTATTAAATGATATCACATTGGTTGCCTCTCATCAAAAGATGAATCATCTCTGCCTTTTGCCTTTACATGGTCGCTACTCCCTCGTTGATTGCAAGAGGCAAACAGGGTATGAAAGAAGGTAAACATTTTGTGAATCCAGCTGGCTTCGTATCTTGTACCTAATAGTAATGTGTATGTCCGCTTGTACAGCATAGGACATTTGTTCATAGAATGCAATTTGGAGGCCAGTATGATCTATCTGTGATCCGGTTGGCTTTCTGTAAATACATGTAGTCATGGGTTAATGGCAAAGTTGGAATGTGTTTGCCATTAGCTTCTTTTAACAGTATATGGATTCAGCTAAAATGGGAGGCATTGGGAGCTTCTGCTCTAATCTCTGAAGTAGTTGGCGGGCAGAGGTGCATTATTACCTTTATCCCCGGCCTCGAGCATTTGAGAACGGCTTCAATTAACTGTTTAAACATTGGTGTACTGATGTTCGCAGGTTTGGAACATTCTCATTCTAATAAGTGAAGAATTTGATTCAATTAAGTTTCCAATTTCTCACTCTGTGCCCTGTATTTGGCTTTTCTTGTTAACATTGGTGGCTATCTCATGTAATTGCACTTATATTTTGTTTTATTTAATA

Fln Alignment:

sp_v1.1_unigene19331___GKSFKDSLKGLEADIQHANTLASEFPREYDGACLQMRLSYSPAAHLFLFLVQWTDCSXXXXXXXXXXXXYKVYVDGTTTMSTHERKASLREFYAVIFPSLLQLHGGITEMEDRKQKAVCMDRYKKKVDEERGQLSDIDLEREEECGICMETNSKIVLPNCSHAMCMKCYREWHARSQSCPFCRDSLKRVNSRDLWIFTDNGEVIDMATLARENLRRLFLYVEKLPLLVPESVFDVYDAH
A9SAG8_______________GKSYKESLKSLEADIQHANTLASEFPRDYDGACLQMRLAYSPAAHFLLFLVRWTNCSLAGALGLLRILIYKVYLDGTTTMSTHERKASLREFYSYIYPSLQQLQGGITEMEDMKQKAVCQERYKKKVDEERGLMSELDLEREQECGICMETNTKIALPDCNHAMCLKCYREWHARSQSCPFCRDSLKRVDSRDLWIFTDSGEIQDMVSIARDNLQRLFMYIDKLPLLVSESIFAIYDAH

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
77	75			25	0.996473
81	75	25			0.996473
90	25		75		0.996473
149	71	28			1.0
152		28		57	1.0
153			28	71	1.0
154			57	42	1.0
155	57		42		1.0
160			71	28	1.0
169		28	57		1.0
170			71	28	1.0
171		28	71		1.0
172	28		14		1.0
917	40		60		1.0
1024		14		85	0.993533
1088	87		12		0.992554
1258	83		16		0.999991
1648	10			90	0.90298
1664		10		90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain