SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19329

Length: 1840 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19329

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	VHA-A; VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A); ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mec	-	-	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	vacuolar h+-atpase catalytic subunit	-	-	96%

Source	ECs	Term	Type	e value	Identity
Blast2go	H(+)-transporting two-sector ATPase.	EC:3.6.3.14	-	0.0	96%

Source	KEGGs	Term	Type	Identity
Blast2go	Oxidative phosphorylation	00190		96%
Blast2go	Photosynthesis	00195		96%
Blast2go	Methane metabolism	00680		96%
Blast2go	Metabolic pathways	01100		96%
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	96%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	96%

Source	ECs	Term	Type	e value	Identity
AutoFact	H(+)-transporting two-sector ATPase.	EC:3.6.3.14	-	0.0	90%

Source	KEGGs	Term	Identity
AutoFact	Oxidative phosphorylation	00190	90%
AutoFact	Photosynthesis	00195	90%
AutoFact	Methane metabolism	00680	90%
AutoFact	Metabolic pathways	01100	90%

Source	GOs	Term	Type	Identity
Blast2go	ATP synthesis coupled proton transport	GO:0015986	Biological Process	96%
Blast2go	hydrogen ion transporting ATP synthase activity, rotational mechanism	GO:0046933	Molecular Function	96%
Blast2go	ATP binding	GO:0005524	Molecular Function	96%
Blast2go	proton-transporting ATPase activity, rotational mechanism	GO:0046961	Molecular Function	96%
Blast2go	ATPase activity, uncoupled	GO:0042624	Molecular Function	96%
Blast2go	proton-transporting V-type ATPase, V1 domain	GO:0033180	Cellular Component	96%

Source	InterPros	Term	Type	Identity
Blast2go	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	96%
Blast2go	ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal	IPR000793	-	96%
Blast2go	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal	IPR004100	-	96%
Blast2go	ATPase, V1 complex, subunit A	IPR005725	-	96%
Blast2go	ATPase, F1/A1 complex, alpha/beta subunit, N-terminal	IPR018118	-	96%
Blast2go	ATPase, alpha/beta subunit, nucleotide-binding domain, active site	IPR020003	-	96%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A887

Fln msg: Distance to subject end: 113 aas, your sequence is shorter than subject: 510 - 623

Fln protein: MPSAYGDKMTTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLTVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKAIAIKSGDVYIPRGVAVPALDKDTNWDFQPKKLSIGDVLTGGDLYATVFENSLMEHRIAVPPGAMGKVTYVAPPGHYTIQDTVLELEFQGVKKQLKMLQSWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGSPDRTGSVTIVGAVSPPGGDFSDPVTAATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYTKALESFYEQFDPDFISIRTKAREVLQREDDLNEIVQLVGKDALAETDKI

Protein Length: 511

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCGATTCCATCCCGCCGGACTCCAAAAGGGCTTTCAATAGAGTTGAGCTCCCACGGCTTCTGTCCAAATGTTCAGCCTGCATGATTGAAACATCATCTCAGACACTCAGATCCGACGGATTGTCTCCCAAATTTTGACTTCTGAATCGAATTCTCCCCTGTCCGTTCGACGAGATTCTAACGCGAATTTACCAGATCAGATCTGGGTTCGCTCTTTTTCGAGCTTTAAATCGAGATTTTTCTGTTCCTGATTTGGGGATTTCTGCTGCAATTTGGAGCAGAAAAC_-_ATGCCGTCTGCATATGGAGATAAAATGACAACCTTCGAGGACTCCGAGAAGGAGAGCGAGTATGGATACGTCCGAAAGGTGTCAGGACCTGTTGTTGTGGCAGATGGCATGGGAGGGGCAGCTATGTATGAGCTTGTTCGAGTTGGTCATGACAATCTTATCGGTGAAATCATTCGTCTGGAGGGTGATTCTGCCACTATTCAAGTTTACGAAGAAACTGCAGGATTAACAGTGAATGATCCTGTCTTACGGACACATAAGCCTTTGTCAGTAGAGCTGGGACCTGGAATACTCGGTAATATTTTTGATGGGATTCAGAGACCTTTAAAAGCGATTGCCATAAAGTCTGGTGATGTCTATATTCCTCGAGGAGTAGCTGTGCCTGCTTTGGACAAGGACACAAACTGGGATTTTCAGCCTAAGAAGCTATCTATTGGAGATGTCTTAACTGGTGGTGATTTATATGCGACGGTCTTTGAGAATAGTCTGATGGAACACCGTATTGCTGTTCCTCCTGGAGCTATGGGCAAGGTTACATACGTTGCACCACCTGGTCATTACACCATTCAGGATACAGTGCTGGAGTTAGAGTTTCAAGGAGTTAAAAAGCAGCTTAAAATGCTTCAGTCCTGGCCTGTGCGTACACCGAGGCCTGTCTCCTCCAAGCTTGCGGCTGACACACCTCTCCTGACAGGACAGCGTGTTCTTGATGCTCTATTTCCCTCTGTGCTTGGAGGAACATGTGCCATACCTGGTGCATTTGGCTGTGGCAAAACTGTCATCAGTCAAGCTCTTTCCAAGTATTCAAACTCTGATACTGTTGTCTATGTTGGTTGTGGTGAAAGAGGAAATGAGATGGCTGAGGTTCTAATGGATTTTCCACAACTGACAATGACCTTGCCTGATGGACGAGAAGAATCTGTAATGAAACGGACGACTCTTGTGGCAAACACGTCCAACATGCCAGTCGCAGCCAGAGAGGCATCAATTTATACAGGTATCACTTTAGCAGAGTACTTCCGTGATATGGGATACAATGTCAGCATGATGGCAGACTCGACATCTCGCTGGGCGGAAGCCCTTCGTGAAATCTCTGGCCGCCTGGCTGAAATGCCAGCAGATAGTGGATATCCGGCCTATTTGGCTGCACGTTTGGCATCCTTTTATGAGCGGGCTGGTAAAGTTAAATGCTTAGGAAGTCCAGACCGCACAGGTAGTGTAACAATTGTTGGAGCCGTTTCTCCTCCTGGTGGAGACTTTTCTGATCCGGTAACTGCAGCAACACTTGGTATTGTTCAGGTATTTTGGGGACTTGACAAAAAACTTGCTCAACGCAAGCATTTTCCATCTGTCAACTGGCTTATTTCATATTCAAAATATACAAAGGCATTAGAATCTTTCTATGAGCAATTCGACCCAGATTTTATTTCTATTAGGACCAAAGCTCGTGAAGTCTTGCAGCGGGAGGATGATCTGAATGAAATTGTCCAACTTGTTGGCAAAGATGCTTTAGCAGAAACTGATAAAATT

Fln Alignment:

sp_v1.1_unigene19329___MPSAYGDKMTTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLTVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKAIAIKSGDVYIPRGVAVPALDKDTNWDFQPKKLSIGDVLTGGDLYATVFENSLMEHRIAVPPGAMGKVTYVAPPGHYTIQDTVLELEFQGVKKQLKMLQSWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGSPDRTGSVTIVGAVSPPGGDFSDPVTAATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYTKALESFYEQFDPDFISIRTKAREVLQREDDLNEIVQLVGKDALAETDKI
D5A887_______________MPSAHGDKMTTFEDTEKESEYGYVRKVSGPVVVADGMAGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKAIAIKSGDVYIPRGVAVPALDKDTAWDFQPKKLSVGDVLTGGDLYATVFENSLMEHRIAVPPGAMGKVTYIAPPGHYTIQDTVLELEFQGVKKHLTMLQTWPVRTPRPVSAKLSADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGSPDRTGSVTIVGAVSPPGGDFSDPVTAATLGIVQAFWGLDKKLAQRKHFPSVNWLISYSKYTKALESFYEQFDPDFISIRTKAREVLQREDDLNEIVQLVGKDALAETDKI

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
25	66	33			0.997452
32			33	66	0.997452
33	33	66			0.997452
35	66	33			0.997452
38		66		33	0.997452
39		66	33		0.997452
42		66		33	0.997452
45		33	66		0.997452
50	33	66			0.997452
55		25	75		0.996473
57			75	25	0.996473
59			25	75	0.996473
61			25	75	0.996473
62	25	75			0.996473
63	75	25			0.996473
64	75	25			0.996473
66	75			25	0.996473
68	60	20			0.99255
70		20		80	0.995493
71		20		80	0.995493
73	80	20			0.995493
74	20	20	60		0.99255
79		50		25	0.995533
80		80	20		0.995493
81	20	60	20		0.99255
82	80	20			0.995493
83		80		20	0.995493
85			80	20	0.995493
87		20		80	0.995493
91	20			80	0.995493
113		14	85		0.993533
114	85		14		0.993533
116		14		85	0.993533
118	85			14	0.993533
119	85		14		0.993533
122	85	14			0.993533
124		42		57	1.0
125	85	14			0.993533
127		85	14		0.993533
131		14	85		0.993533
132	85			14	0.993533
193		50	50		1.0
838	88			4	0.999262
843		92		8	0.999718
844	92	8			0.999718
847		8	92		0.999718
1082			90	10	0.999898

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain