SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19327

Length: 1876 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19327

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CC-NBS-LRR resistance-like protein n=1 Tax=Pinus lambertiana RepID=Q1L6F3_PINLA	-	-	91%
FL-Next	tr=CC-NBS-LRR resistance-like protein; Pinus lambertiana (Sugar pine).	-	-	95%
Blast2go	leucine rich repeat family expressed	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	apoptotic process	GO:0006915	Biological Process	73%
Blast2go	defense response	GO:0006952	Biological Process	73%
Blast2go	protein binding	GO:0005515	Molecular Function	73%
Blast2go	ATP binding	GO:0005524	Molecular Function	73%

Source	InterPros	Term	Type	Identity
Blast2go	Disease resistance protein	IPR000767	-	73%
Blast2go	Leucine-rich repeat	IPR001611	-	73%
Blast2go	NB-ARC	IPR002182	-	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q1L6F3

Fln msg: your sequence is shorter than subject: 483 - 777

Fln protein: KSIPTNANEHLVKQVQAQCKGLPLALKVIGSSLHGEPWPVWESAKKKLLNGESISDYHKEGLLKCLETSIDVLDEEARECFLDLGSFPEDRKISVDALLDIWVYVRKIEWQDAFVILLELASRNLLNLTSNLRSQPINYGSASELYFSQHDVMRALALDMASRDRIVCRKRLFMPKKEESVPGKWELFKDQAFDAQIVSIHTGTMEENQWCKMNFCEAEALVLLFSATNYSLPSFLNKMRKLKVLIVFNYGSKRATVKGLPLLSSLAQLKTIRLERLIVPPLQEHSKVLQNLEKLSLSLCEGLGNMSRFNGIQSNLKLPIMLDFNMDHCCDLEELPVGICDMSSAQKWSITNCHLLRKLPDDLGRLSSLRMLRISACLGLQVLPASIGKLGKLEYIDISLCECLKELPEEIGQLKKLEELDMRECSRLRKLPKSVGGLKSLKHVICDEKIGQQWNRLKSCSATMDLRVEIVEAHFSLDWLDG*

Protein Length: 484

Fln nts: GAAATCAATTCCAACAAATGCAAATGAACATCTAGTCAAGCAGGTGCAAGCACAGTGTAAAGGTCTGCCACTGGCTCTGAAGGTGATAGGAAGCTCTTTGCATGGTGAGCCTTGGCCGGTGTGGGAGAGTGCCAAGAAGAAGCTATTAAATGGTGAATCAATATCAGATTATCACAAAGAAGGGCTTCTTAAATGCTTGGAGACCAGTATTGATGTCCTGGATGAAGAAGCACGAGAGTGCTTCTTAGACCTGGGGTCATTTCCAGAGGATAGAAAAATATCTGTGGATGCACTATTGGACATTTGGGTTTATGTGCGAAAGATAGAGTGGCAGGATGCTTTTGTCATCTTGCTAGAACTTGCAAGTAGAAATCTGTTGAATTTAACAAGCAATCTCAGGAGTCAACCAATTAATTATGGAAGTGCCTCTGAGCTGTACTTTTCCCAGCATGATGTCATGCGAGCCTTGGCCCTAGATATGGCATCCCGAGATAGGATAGTTTGCAGGAAGAGGTTGTTTATGCCTAAAAAGGAGGAGAGTGTACCAGGGAAATGGGAGCTGTTCAAGGATCAAGCGTTTGATGCTCAAATAGTTTCCATTCACACAGGGACAATGGAAGAGAATCAGTGGTGTAAGATGAATTTTTGTGAGGCAGAGGCTTTGGTTCTACTCTTTTCCGCAACCAATTACTCTCTTCCATCGTTTTTGAATAAAATGAGAAAATTGAAAGTCCTCATAGTATTCAATTACGGGTCCAAGAGAGCCACAGTGAAGGGTCTGCCATTGCTATCATCACTCGCTCAGCTCAAGACTATTCGTTTGGAGAGGTTGATTGTGCCCCCACTTCAAGAGCACAGTAAAGTCTTACAGAACTTAGAGAAGCTATCTTTAAGCTTATGTGAAGGGCTTGGAAATATGTCCAGGTTCAATGGCATTCAGTCGAATCTAAAGCTTCCCATAATGCTAGATTTTAACATGGATCATTGCTGTGATTTGGAGGAGTTGCCCGTTGGTATTTGTGACATGTCTTCAGCTCAAAAGTGGTCTATCACTAACTGTCACCTTCTTCGAAAGTTACCTGATGATCTTGGGAGGCTCAGTTCTTTAAGAATGTTAAGAATATCTGCATGTCTAGGTCTGCAAGTGCTTCCAGCATCTATTGGAAAACTTGGGAAGCTGGAATATATAGACATTTCTCTATGTGAGTGCTTGAAAGAACTTCCCGAGGAAATAGGGCAGCTAAAGAAACTCGAGGAGCTTGACATGAGAGAGTGTTCTCGGTTGAGGAAGCTGCCTAAATCAGTTGGAGGGCTGAAATCTCTAAAGCATGTTATATGTGATGAGAAGATTGGGCAGCAATGGAATCGTCTGAAGAGCTGTTCTGCTACCATGGATCTTAGAGTTGAAATTGTAGAAGCACACTTCAGCTTGGATTGGCTGGATGGTTAA___GATCTCTCTTAAACATGATGCCAAGTGCAAGTAGACTGGATCAGGACGAGTGCACGCTGCAAACATGTTATCCATGTTCCACTGGCATTATTGGCCCTTCAGAAATTAGTTATCCAAAGTTTGTGTGTAGTGTGTCTAGTCCTGCTGTTATAGCGAAATAAATATTCGTAAAGAATATAAGTGTGTATCTAGAGTCCTCGTGGTAAAAGCAGGGTGTCTAGTTGTGATCGTAACATTAAGGAACTTTTAAATATTGTATTAAGACTAAATGACTCTAAATATTGTGTTTTAAAACTTTAATATTGTGTTTTAAGATTAAAAGTTTGTTTAAGATTAGAAGTTCACTTCAACTTGTGGACAGAAGTGAATAAGGACAAATTTTTAATGGAATGGTGATGTGCGTAAAAATTTCAAAATTTGGTTTGT

Fln Alignment:

sp_v1.1_unigene19327___KSIPTNANEHLVKQVQAQCKGLPLALKVIGSSLHGEPWPVWESAKKKLLNGESISDYHKEGLLKCLETSIDVLDEEARECFLDLGSFPEDRKISVDALLDIWVYVRKIEWQDAFVIXXXXXXXXXXXXXXXXXXQPINYGSASELYFSQHDVMRALALDMASRDRIVCRKRLFMPKKEESVPGKWELFKDQAFDAQIVSIHTGTMEENQWCKMNFCEAEALVLLFSATNYSLPSFLNKMRKLKVLIVFNYGSKRATVKGLPLLSSLAQLKTIRLERLIVPPLQEHSKVLQNLEKLSLSLCEGLGNMSRFNGIQSNLKLPIMLDFNMDHCCDLEELPVGICDMSSAQKWSITNCHLLRKLPDDLGRLSSLRMLRISACLGLQVLPASIGKLGKLEYIDISLCECLKELPEEIGQLKKLEELDMRECSRLRKLPKSVGGLKSLKHVICDEKIGQQWNRLKSCSATMDLRVEIVEAHFS
Q1L6F3_______________KSIPSTANEHLVKQVQAQCKGLPLALKVIGSSLHGEPWPVWESAKKKLLNGESISDYHKEGLFKCLETSIGVLDEEARECFLDLGSFPEDRKISVDALLDIWVYVRKIEWQDAFVILLELASRNLLNLTSNLRSQAINYGSASELYFSQHDVMRALALDMASRDRIFCRKRLFMPRKEESLPGKWELFKDQAFDAQIVSIHTGTMEEDQWCKMNFCEAEALVLLFSATNYFLPSFLSKMRKLKVLIVFNYGSKRATVKGLPLLSSLAQLKTIRLERLVVPPLQEHSKVLQKLEKVSLSLCEGLGNMSRFNGNQSNLKLPVMLDFNMDHCCDLEELPLGICDMSSAQKWSITNCHLLRKLPDDLGRLSSLRMLRISACLGLKELPASIGKLGKLEYMDISLCECLKELPEEIGQLKKLEELDMRECARLRKLPKSVGGLKSLKHVICDEKIGQQWNRLKSFSATMDLRVEIVEAHFS

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
15		33	66		0.997452
16	33	66			0.997452
17	66		33		0.997452
18	33	66			0.997452
22	33			66	0.997452
23	66		33		0.997452
65			33	66	0.997452
77		66		33	0.997452
128			66	33	0.997452
281	80	20			0.995493
284		20		80	0.995493
294		20		80	0.995493
302		80		20	0.995493
326	80		20		0.995493
335			80	20	0.995493
380	20		80		0.995493
392		80		20	0.995493
408		75	25		0.996473
413		25		75	0.996473
435		75		25	0.996473
1254	14		85		0.993533
1567	90			3	0.997073
1569	90		3		0.997073
1716		12	87		0.992554
1729	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain