SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19270

Length: 1956 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene19270
CGTCGTGACCTTGGCTGTCACTCATGTTATCTCTTTTATTACATCCAACGGATGTTGTATTATATCGCGCGAGCTTAGGTTGCGTTGGGTTGCCAGTGATAGTAAGACAGTCGAGCAACATCACAGAGCTAGAGATTGGGATTGGTCATGGAAGATTTTCAGGACGCAATTCTACTGTCAATAATAGTGAAAACAGATGCCAAATGCACGGGAAAACTCGGGTGCGTAAGCCAGCGGTGGCATTCGCTGGCTTCAGATGATCATCTCTGGTGTCACTTTTGCGCGCAAGATTTCAATATTTCGTCTCGCCTCGATCCTACTGGAAGTCCTTGTTCGTCCTACAAGGAACCTATGAAAAATGGCACGAAGCATTTTACATGTATCCTTTATCAATTGTGAGACGAGCCAAGGATTGCTGGGATATTATTAGAAATTGGACCTCAATCCATTTTCCAGAGGTGGCAAATACTCTAGTGCCTGGGGCATCTGAAGATGAAATTAGGAGGGCAGAGGATAAACTTGGGTGGCAACTGCCTGTTTCTACAAGGATTCTGTATCGTTTCTGCAATGGCCAAAACATCCCACATGGCGGTCTTCCACAAACTCAGCAGCTATCTGTCTTGGGCGTTATGGGAGGTTATAATTTCTACGCTGCCCATGTTAATGTGCATTTGTTACCCTTGCAAGAAGTTTTGGAACTTACCGAACATTGTGCTTCACTGATAACACTCCCTAGGGGATCGAAGCATATTGTCATTGCAGCCTCATGTAAAATGAATAAGTTTTTCTTCCTTGACTGTTCCGATGGTCAACTCTATGTTGGCACTAAGAACCTCTTTGCAACTGGGGAGATGATGCCATGTGTCGCTAGTTCATTAATAGATGTAGCTCAGCAAGATGCAATGCTCCTGTGGTTGGAAGAATATGGCAGACAGTTAGAAGCTGGCAATTTTTCTGTTCGTAAAGATGGTAAAGATGGTAATATCTGGAGTATCAGTTTATTTCCTGAAAGAGAGCCTCTATGTAGTGAGGCTGTGACAAATGGTGTACAGGTACGTGCTTCTGCAGTGTTTGTGCCAGAGGAAAGCAATTTACTGGAGAACGGTGACGAATATTGTTTTTCCTATTCAATCCGCATGCGCCTTTTACATCAAGAAAAAATTTCTGAGGGGGGGATGTTAAGTTCATGCCAACTAGCTAGAAGACATTGGATAATTCGAGCAAATGATACTATCATAAATGATTTTCATGGTGAAGCTGTTATTGGCAAGTATCCATATCTGAAAGAGGGCGGTGACGTATTTGTATATCAGAGCTGCTGTCCTCTGCCAACTTCTTCTGGCTCAATTGAAGGTGATTTTACATTTGTGCCTGGAAGGCTAAGCAAGCCTCATGGACCAGAATTCAGTGTTCGGGTGGCTCCATTTCCTCTCCAGATTCCTCAGTATATTTTTTGATTGCCAAGAATGCAAAAGTGAGATTGTGCTAATCAAAGAGTTTTAATAAATAACTGGAAAGTGGAAAATGACGGGAAGGTGATGATTCTGTTGGGGTAAACGAAATTTCTACACGCTGGACCTCTTGAACGAGTATTCATAGGCACTGTCTGAGCTCTGGGGAGATTAATTGTTGTTTTTAATGGCGTCTCTTAGAATTTAGGATGTGTAATATTATGCCTTTTGGTATTAGCAGCATTCTGTTATTGTTGAAGTCATAAAGCTTATCCCTTCGATTTATTTTTCTTCTCTTAAATTCCAAAATGGTGACTGTTGTGTTCTTCTAACAATGCTTCTGGATTGCTCTCAGATAGTATTTGTTGGCAAATGATTGTTCTGGCTCGTTAATTCAAATTCATTTCTTAGTGTGTATTTGAGTTACGAAATGTGAGGTAGAAAGCTTTCACTGTTGACAACACATCCCCTACATTTTTCATGTTTCCGGAATGGGGGGATGCCT

Ace file of the UniGene sp_v1.1_unigene19270

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to F-box-containing protein 2	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	f-box-containing protein 2	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	64%
Blast2go	SCF ubiquitin ligase complex	GO:0019005	Cellular Component	0.0	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LM73

Fln msg: your sequence is longer than subject: 360 - 301

Fln protein: MYPLSIVRRAKDCWDIIRNWTSIHFPEVANTLVPGASEDEIRRAEDKLGWQLPVSTRILYRFCNGQNIPHGGLPQTQQLSVLGVMGGYNFYAAHVNVHLLPLQEVLELTEHCASLITLPRGSKHIVIAASCKMNKFFFLDCSDGQLYVGTKNLFATGEMMPCVASSLIDVAQQDAMLLWLEEYGRQLEAGNFSVRKDGKDGNIWSISLFPEREPLCSEAVTNGVQVRASAVFVPEESNLLENGDEYCFSYSIRMRLLHQEKISEGGMLSSCQLARRHWIIRANDTIINDFHGEAVIGKYPYLKEGGDVFVYQSCCPLPTSSGSIEGDFTFVPGRLSKPHGPEFSVRVAPFPLQIPQYIF*

Protein Length: 361

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTATCTCTTTTATTACATCCAACGGATGTTGTATTATATCGCGCGAGCTTAGGTTGCGTTGGGTTGCCAGTGATAGTAAGACAGTCGAGCAACATCACAGAGCTAGAGATTGGGATTGGTCATGGAAGATTTTCAGGACGCAATTCTACTGTCAATAATAGTGAAAACAGATGCCAAATGCACGGGAAAACTCGGGTGCGTAAGCCAGCGGTGGCATTCGCTGGCTTCAGATGATCATCTCTGGTGTCACTTTTGCGCGCAAGATTTCAATATTTCGTCTCGCCTCGATCCTACTGGAAGTCCTTGTTCGTCCTACAAGGAACCTATGAAAAATGGCACGAAGCATTTTAC_-_ATGTATCCTTTATCAATTGTGAGACGAGCCAAGGATTGCTGGGATATTATTAGAAATTGGACCTCAATCCATTTTCCAGAGGTGGCAAATACTCTAGTGCCTGGGGCATCTGAAGATGAAATTAGGAGGGCAGAGGATAAACTTGGGTGGCAACTGCCTGTTTCTACAAGGATTCTGTATCGTTTCTGCAATGGCCAAAACATCCCACATGGCGGTCTTCCACAAACTCAGCAGCTATCTGTCTTGGGCGTTATGGGAGGTTATAATTTCTACGCTGCCCATGTTAATGTGCATTTGTTACCCTTGCAAGAAGTTTTGGAACTTACCGAACATTGTGCTTCACTGATAACACTCCCTAGGGGATCGAAGCATATTGTCATTGCAGCCTCATGTAAAATGAATAAGTTTTTCTTCCTTGACTGTTCCGATGGTCAACTCTATGTTGGCACTAAGAACCTCTTTGCAACTGGGGAGATGATGCCATGTGTCGCTAGTTCATTAATAGATGTAGCTCAGCAAGATGCAATGCTCCTGTGGTTGGAAGAATATGGCAGACAGTTAGAAGCTGGCAATTTTTCTGTTCGTAAAGATGGTAAAGATGGTAATATCTGGAGTATCAGTTTATTTCCTGAAAGAGAGCCTCTATGTAGTGAGGCTGTGACAAATGGTGTACAGGTACGTGCTTCTGCAGTGTTTGTGCCAGAGGAAAGCAATTTACTGGAGAACGGTGACGAATATTGTTTTTCCTATTCAATCCGCATGCGCCTTTTACATCAAGAAAAAATTTCTGAGGGGGGGATGTTAAGTTCATGCCAACTAGCTAGAAGACATTGGATAATTCGAGCAAATGATACTATCATAAATGATTTTCATGGTGAAGCTGTTATTGGCAAGTATCCATATCTGAAAGAGGGCGGTGACGTATTTGTATATCAGAGCTGCTGTCCTCTGCCAACTTCTTCTGGCTCAATTGAAGGTGATTTTACATTTGTGCCTGGAAGGCTAAGCAAGCCTCATGGACCAGAATTCAGTGTTCGGGTGGCTCCATTTCCTCTCCAGATTCCTCAGTATATTTTTTGA___TTGCCAAGAATGCAAAAGTGAGATTGTGCTAATCAAAGAGTTTTAATAAATAACTGGAAAGTGGAAAATGACGGGAAGGTGATGATTCTGTTGGGGTAAACGAAATTTCTACACGCTGGACCTCTTGAACGAGTATTCATAGGCACTGTCTGAGCTCTGGGGAGATTAATTGTTGTTTTTAATGGCGTCTCTTAGAATTTAGGATGTGTAATATTATGCCTTTTGGTATTAGCAGCATTCTGTTATTGTTGAAGTCATAAAGCTTATCCCTTCGATTTATTTTTCTTCTCTTAAATTCCAAAATGGTGACTGTTGTGTTCTTCTAACAATGCTTCTGGATTGCTCTCAGATAGTATTTGTTGGCAAATGATTGTTCTGGCTCGTTAATTCAAATTCATTTCTTAGTGTGTATTTGAGTTACGAAATGTGAGGTAGAAAGCTTTCACTGTTGACAACACATCCCCTACATTTTTCATGTTTCCGGAATGGGGGGATGCCT

Fln Alignment:

sp_v1.1_unigene19270___SEAVTNGVQVRASAVFVPEESNLLENGDEYCFSYSIRMRLLHQEKISEGGMLSSCQLARRHWIIRANDTIINDFHGEAVIGKYPYLKEGGDVFVYQSCCPLPTSSGSIEGDF
B8LM73_______________SDTTTLGIRVQVRSVYVKGRSQ--PSKGQYFFAYRIRISNCCNRPV---------QLLRRHWAITDAVGKTEHIWGIGVIGEHPVLLPGTS-FEYSSACPLGTATGKMEGDF

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
65	75		25		0.996473
66			25	75	0.996473
67		85	14		0.993533
68	14		85		0.993533
70			85	14	0.993533
78	85			14	0.993533
734	16	83			0.999991
886	90		10		0.90298
887			10	90	0.90298
1029	83		16		0.994512
1352		14		85	0.993533
1393		87	12		0.992554
1396	87		12		0.992554
1403	85			14	0.993533
1405	85		14		0.993533
1406	85	14			0.993533
1411		14	85		0.993533
1462		14		85	0.993533
1464		85		14	0.993533
1466	85		14		0.993533
1467	85			14	0.993533
1470	85	14			0.993533
1474	85		14		0.993533
1475	85			14	0.993533
1476	85	14			0.993533
1478		14	85		0.993533
1480		14	85		0.993533
1505	57		42		1.0
1574		75		25	0.996473
1870	14			85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain