SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19266

Length: 1876 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19266

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PLATZ domain containing protein	-	-	4.0e-39	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	protein	-	-	0.0	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LM13

Fln msg:

Fln protein: MVGTMLPLRDEEFGPPWLEPLLQTHFFRPCQFHGDSSKSECNMFCLNCRGEALCTYCRARHKDHHIVQIRRSSYHDVIRVSEIQKVLDITGVQTYIINSARVVFLNERPQPRPGKGVTNTCEICERSLVDTFRFCSLGCKLQGIKRHRDMTFILPSKHQRDESEDSSSQKRVRISKRSFEYFSEENGAESTSIDGVTSFKAEDDANNLETGRFRYSPNGNPQVINPPTPPIVSIHRNARRRKGIPHRAPLGT*

Protein Length: 254

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCCGTCGTGACCTTGGCTGTCACTCAAGTTTTCGCTCTATTTTTGATCCGACCATAGGCTTTTTAGCGCTGCTGCTTTCAGGCTTTTGTTTTCATTGGGAAGCATTAGTTTTGTGCTTGTGTTTGTATATTGTGCAAGTTGAATGTCGGTGGATGATTCCGGTCAGGTTATTTTGGAGAAATCAAGACTCTGCATAATGCACAGCTCAGAGCAGAGGCTGAATTGATTCGGCGCTGTGCAGGGGTTTTGTTGTAAGTGACGGTGCAGAATCAAGGGTTAGAGTTTTCATTGTTGTGATCGACAGATTCTAGCGTTTTGTTAGGCTTGCTTATAGAAACCTCAATTAGCAGGGACTTTAAGGTAAATTCGTCCACGAATTTGGCCATTGAATCCATTCAAGAAGCCAATCATAAAGTGGTTTGAGGAAGGCGGTCGTTACCTTTTGTCGGTGCAACAGAGGAAGAGCAAGCTGGCGATAGAGAATCGGCCGAAAGCTCATATTTTCAAGACGAGAGACAAAAGAATC_-_ATGGTTGGAACAATGTTACCTCTGCGTGACGAAGAATTCGGCCCTCCGTGGCTGGAACCTCTGCTGCAAACACATTTCTTCAGGCCGTGCCAGTTCCATGGAGATTCAAGCAAAAGCGAGTGCAATATGTTCTGTCTAAACTGCAGGGGAGAGGCGTTGTGCACTTATTGCCGAGCACGCCACAAGGACCATCACATTGTGCAGATAAGACGGTCCTCCTACCATGACGTGATACGGGTTTCAGAGATACAGAAAGTCTTGGACATCACAGGCGTGCAGACCTACATTATCAACAGTGCAAGAGTCGTTTTCCTCAACGAAAGACCTCAGCCAAGGCCGGGCAAGGGCGTTACCAATACTTGCGAGATTTGCGAGCGAAGCCTTGTGGATACATTTAGGTTTTGCTCCCTCGGATGCAAGCTGCAAGGAATAAAGCGCCACCGGGACATGACATTCATCTTGCCTTCAAAGCACCAGAGGGACGAATCCGAAGACTCTTCTTCTCAGAAAAGAGTCAGAATATCAAAAAGGAGTTTTGAGTATTTCTCGGAAGAGAATGGCGCAGAGAGCACGTCCATCGATGGCGTCACGTCCTTCAAGGCAGAAGATGACGCCAATAATCTCGAGACCGGCAGATTTCGTTACAGCCCGAATGGCAATCCCCAAGTTATTAACCCTCCTACGCCACCGATTGTATCAATCCACAGAAACGCCAGGAGGCGAAAGGGGATTCCACACAGAGCACCACTGGGGACATAA___TATGCCATTTGCTACAACCAACCAGTGTCCAGCCCTCAAGCAAATAACCTAAGAAGTATTACAGGCAAAACTTTAAGAGAATTACCATCTAATATGATATATGGTAGATTCATTTGCAGCGACTACAGGGATAATCTATAGAAAGCATATATTGCAGGTTTAAAAGCATATTTGGAGAACATTTCAGTTTCAAATTTTCTTTCATCTGCAACGCAGCCAGGCCATTGTACATGTTTTCCACACCTCACAGGAAAGATAAGTAGTTATCTTATTATAATTATTACCATGTCTAGAAGAAGACCCTGCTGCAAATGTCCTGTATAAGTGTAGGTATTCTTTCATTATTAAATATCCTCAGGTAGGAAAAGTAGTGTAGTCAGAACTTGTAGAAACTTTTGAAGATGGATTTGTTATAAATGTATATACTATAAATAAATCAAAGCAAGTGAAGTGTATTCCTTCCTTCCTGCAGCTTCTGGGTCCATTGTTCAATATGCTATGCTTGCTCCCTGCAAGGACAGTAGAATTAATAAATATGATGACCAAATAATTCGTCTCTTTCAAAC

Fln Alignment:

sp_v1.1_unigene19266___MVGTMLPLRDEEFGPPWLEPLLQTHFFRPCQFHGDSSKSECNMFCLNCRGEALCTYCRARHKDHHIVQIRRSSYHDVIRVSEIQKVLDITGVQTYIINSARVVFLNERPQPRPGKGVTNTCEICERSLVDTFRFCSLGCKLQGIKRHRDMTFILPSKHQRDESEDSSSQKRVRISKRSFEYFSEENGAESTSIDGVTSFKAEDDANNLETGRFRYSPNGNPQVINPPTPPIVSIHRNARRRKGIPHRAPLGT
B8LM13_______________MVGTMLPLRNEEIGPPWLEPMLKTHFFKTCQFHGDSSKSECNMFCLDCRGEALCTYCRVRHKDHHIVQIRRSSYHDVIRVSEIQKVLDITGVQTYIINSARVVFLNERPQPRPGKGVTNTCEICERSLVDTFRFCSLGCKLQGIKRHRDMTFILPSKHHRDESEDSSSQKRTRISNRSFEYFSEENGAESTSIDGVTSVKAEDDANNIETVRFRYSPNSNPQDIYPPTPPIVSIHRSVRRRKGIPHRAPLGT

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1080	81			18	0.999994
1081	63	27	9		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1766	1778	TTCC TTCC TTCC T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain