SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19259

Length: 1799 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene19259 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mannose-1-phosphate guanyltransferase, putative n=2 Tax=Malpighiales RepID=B9R8Y9_RICCO	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	protein	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Mannose-1-phosphate guanylyltransferase.	EC:2.7.7.13	-	0.0	81%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	81%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	81%
Blast2go	Metabolic pathways	01100	81%
Blast2go	Biosynthesis of secondary metabolites	01110	81%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	81%
Blast2go	biosynthetic process	GO:0009058	Biological Process	81%
Blast2go	mannose-1-phosphate guanylyltransferase activity	GO:0004475	Molecular Function	81%
Blast2go	peroxisome	GO:0005777	Cellular Component	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8N1

Fln msg: your sequence is longer than subject: 415 - 308

Fln protein: MAGEGKVIAVIMVGGPTKGTRFRPLSLNIAKPLFPLAGFPMVHHPILACKKIPNLAQIYLIGFYDERLFSLYLSNVSSELKIPVRYLCEDKPHGSAGALFKFHDLLMEDNPKEIFVMHCDICCSFPLVDMQMAHRNYGGIGTMLVKKVSTEATGKFGELVADPLTKELLHFAEKPETHVSDYINCGVYIFTPDIFVTMQTLTPTRKERGIFRRLSSFESLEFSSPSVQKDVIRLDEDLFTPLVGKKMIYTFETSDFWEQIKTPGMSLRCSSLYLKQYHMKTPELLSSADAIMTVNIIGDVYIHPSSKIHPTAKIGPNVSISANARIGPGVRLRDCIILDDVEVQDNAIVMHAIIGWKASIGKWARVQGERNYGAKNGISILGEAVTVEDEVVVLSSTVLPHKALNQSVQREIIL*

Protein Length: 416

Fln nts: ATGGGGGTTGTTTATTTTACCAGCAGTTTTGCAACTCCAGGAAAAAGTTGTGACAAGATCTTTCGAATTGCAGTCTGTTTGGAGAAAATTTCGAAATTCCTGCGTACATCGCGTCTCAACAGTAACGCCGAAGGATAATAACGGACGAAGCAAGG_-_ATGGCAGGTGAAGGCAAAGTGATTGCTGTCATCATGGTGGGAGGGCCAACAAAAGGTACACGTTTTAGGCCTCTCTCTCTCAACATAGCGAAGCCTCTGTTCCCTTTAGCTGGATTTCCAATGGTCCATCATCCTATACTTGCTTGCAAGAAGATACCTAATCTGGCTCAAATTTACCTTATTGGCTTTTATGATGAGCGTCTATTTTCTCTCTACCTGTCCAATGTGTCAAGTGAATTGAAAATTCCTGTCAGATACCTTTGTGAGGATAAACCCCATGGTTCAGCAGGTGCATTGTTCAAATTTCATGACCTTTTGATGGAAGACAATCCAAAGGAGATTTTCGTCATGCATTGTGATATCTGTTGCAGTTTTCCATTGGTAGATATGCAAATGGCACATAGGAATTATGGAGGGATTGGGACGATGCTAGTTAAGAAGGTTTCCACTGAAGCTACAGGGAAGTTTGGTGAATTAGTTGCAGACCCTCTGACAAAGGAGTTACTACATTTTGCAGAAAAACCAGAAACACATGTCAGTGATTATATAAATTGTGGGGTTTACATTTTTACTCCAGATATATTTGTTACCATGCAGACCCTGACACCAACTCGTAAAGAAAGAGGGATTTTCCGACGCCTCTCTAGCTTTGAATCCTTGGAGTTCTCATCACCGTCAGTTCAAAAGGATGTTATCAGATTGGACGAGGACCTTTTTACCCCATTGGTGGGGAAGAAGATGATTTATACATTTGAGACATCTGATTTTTGGGAGCAAATAAAGACCCCAGGGATGTCATTGAGGTGCTCTTCTTTGTATCTAAAACAGTATCACATGAAAACACCTGAACTTTTGTCTTCTGCTGATGCTATCATGACTGTAAATATCATTGGTGATGTTTACATTCATCCTTCATCAAAGATTCATCCAACTGCTAAAATTGGACCAAATGTGTCGATCTCTGCAAATGCTCGAATTGGTCCTGGGGTGAGACTGAGGGATTGCATCATTCTTGATGATGTTGAAGTACAGGACAATGCTATCGTGATGCATGCCATAATTGGCTGGAAGGCATCAATCGGGAAATGGGCAAGGGTGCAGGGTGAAAGAAATTATGGAGCAAAAAATGGTATTTCAATTCTGGGTGAGGCTGTTACTGTGGAAGATGAAGTCGTAGTTCTTAGTAGCACCGTTCTTCCTCACAAGGCTCTGAATCAAAGTGTTCAAAGGGAGATTATTTTATGA___TAGGTTCAACATCTGACATGATGTATGCTACATATGTATCTATAATTCAACCAATTCCATATTAAAAGAATAGGACAAGTGTTGGTTCGAAACAAATGTTGAGGTTGCAGGTATCAGAAATTTTGGAGATGCTTTATTCCATTCTCCTAGAGTTAGGCTGTCAGCTATATGATCTATTATATGTTTATTTCACAAATTTTTTTAATCATACAATAATTTCTAAACTATCGACATGAGCTCAATAACTTGTTCTGTAGTGTGAATTGTGCATGCAACTTCAATGAAAATGTTGGTCAACATTATTATACTGGCATGCGGTAGGAGGAACTTCATTTCCAAACCTCCAGTGCACCTTGAAACTACAACCATTGTTAAGAAGAAATTATGGTAGTGATACCA

Fln Alignment:

sp_v1.1_unigene19259___MEDNPKEIFVMHCDICCSFPLVDMQMAHRNYGGIGTMLVKKVSTEATGKFGELVADPLTKELLHFAEKPETHVSDYINCGVYIFTPDIFVTMQTLTPTRKERGIXXXXXXXXXXXXXSPSVQKDVIRLDEDLFTPLVGKKMIYTFETSDFWEQIKTPGMSLRCSSLYLKQYHMKTPELLSSADAIMTVNIIGDVYIHPSSKIHPTAKIGPNVSISANARIGPGVRLRDCIILDDVEVQDNAIVMHAIIGWKASIGKWARVQGERNYGAKNGISILGEAVTVEDEVVVLSSTVLPHKALNQSVQREIIL
D5A8N1_______________MEDDPANIFLLNCDVCCSFPLADMLEAHCGYGGMGTILVIKVSAESASQFGELVADPVTGELLHYAEKPETFVSDRINCGVYIFTPDIFLGIQDVSTQRKDRATMRRVSSFEALQSATKALPTDFVRLDQDILSPLAGKRKLYTYETSDFWEQIKTPGMSLRCSSLYLSQYRLTSPELLAKSDGGRTATIVGDVYIHPSAKVHPTAKIGPNVSISANARVGAGVRLIGCIILDDVELKENSIVMHSIVGWKSSIGRWSRVQGEANYTSKFGITILGEDVTVEDEVVVANCIVLPHKMLNMSVQEEIIL

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
490		46		53	1.0
500	53		46		1.0
677	90		10		0.90298
692	85		14		0.993533
911	88	11			0.923564
912	88	11			0.923564
930	87	12			0.992554
1092	12			87	0.992554
1096	12	87			0.992554
1097		87		12	0.992554
1303		20	80		0.995493
1305	20	20			0.99255
1311			75	25	0.996473
1315	75			25	0.996473
1500		14		85	0.993533
1602		11		88	0.923564
1603	11			88	0.923564
1668		62		37	1.0
1762	85	14			0.993533
1763	85	14			0.993533
1765	14			85	0.993533
1766		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain