SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19224

Length: 3116 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene19224
CGTCGTGACCTTGGTGTCACTCCAAGTGTTTTCAATGTTGTCAAATCCATGATTCTCACCACCGAGGTTGGTATCAGTAAATGAATGGGCGCTGTCGCTTGTTGTACCGAGCTAGCTGGATAGCCAGGTCAAATAATTGTGGCGTATCATATTGTCACGCTTCTTGTTTTTAAAACTAACTTTGAATCTTTGTCATTGAATATTGATCCGGGTGCAGCCCAGACTTGAATTGAATTCAACAGTAGTTGTTGCCATTTCTCCACTCCTGATATTCTAGAAGCAGCAACCATTAATGGCCTCATGCTGTTTGCCTTCTTGCTTTCTCGGTGTTGAAACAGTCTCTATATTGGGGCTCTTCGTCTTTTCTTGTATTCCTCCTTTCTAATCTTTTGGGTGCCTACCTATATTATTTGTCTCTTCACATTCCTGCCCAACCATTCAATTTCAGATCTGGGAGGCCTTATCGATAAAGGGTGCTCCCATCAAAATCCAGGGTGCCCATCAACACACATATTTCTGCAGGGCCTAATCTGCAAATTTCTGTGTTTCAGCAATCCTTTTTAAGCTTTTGCATTAAGAAATCATTGTATAAGGTTCGATCTCTGCATTTCACTGCTTCCGCATTCAATTCTTGCATTAACTGCATTAAAATAGGTTCCGACAAGCCCTTCTAATTTCCTATCTTTGCATGGATTAATTTTGAATCCATGGGGGACCCTTTATATTCCAATTGTGAATGATAAGGATGCAATCAAGTTTCGATTATCCCACAACAAATATCGGATCTTTTGTACCGAATTCTTCGCTCTGTAAGTGTCCTGCATAGGGAGGATTAGATCTATCAGAGATGCCCAGCGTCGGTGTGCAATTGTACAGTGTTTTCTTCAAGCTTTTACTCAAGCACAGGCTCCAGAACCAAGCGCAAGTGGCCGATCATGATGCTGTGCAAGGGGTTACATCGAGGTCTGGATCAGGCAACGTGCCTGCAAATGCTGCATTCGTCGATGGGATTGCGACCAAGGACATACACATAGATGCCCTCACAAATCTGTCGATCAGGATTTTTCTTCCAGAGTCATCTTTGTTACCTGAACCGGTATCTAAACAGTCCCTGACTGGTCTGAAAGATGCAGGGGTGGGATCTGATAGGAGAACAGAGGAATTAGACACTAATAGAGGCTTTAGGAGGAGCAGCTATGGAGGGGCCATCGACACAAGTCATGGGGAGGGCAATAGGAGGAGCAGCTATGGAGGTATTGGCGAGAAAGAGAGGAGTTCCATGAACGAAAGGCTTAGGAATGGGATTGAAGCAACAGGTTATATAACACAGAAGGAGGGCTTTCAGCCGAATGGGGGTACTAGATTGGGGCATGACGGCACAGAATTTGAGACAGTGCGGTCTAGATCTGGGGCAGATGCGGGGAAAGAGAAGAGAGTAGAAGCCGGGAATTACAAAGGCTACCTGCCCAAAAATTTAGAGTCCGTTAACCGGAGATTGCCCATCATCTTTCAGTTCCACGGTGGGGGGTTTGTCGCGGGTAGTAAGGATTCTTCTGCCAATGATTTTTTCTGCAGGAGGTTGGCCAAAGTGTGCGATGCAATAGTTATAGCTGTAGGATATCGCCTTGCGCCGGAGAACAAGTTCCCAGCAGCATTCGATGATGGATTCAAGGCTGTTCAGTGGTTGGCGAAACAGGCCAATCTTGCCGAGTGCAACAAGTCTTTTTCGCATGTACCCAAGGGTTATCTTCGAAATGATTTGGATGTTTACAGAGTAGATTCTCATCGGGAAATTCTCGACACATTTGGAGCTTCTTTGGTAGAGCCATGGCTCGCGGCCCACGGAGATCCTTCCAGGTGTGTACTTCTTGGAGTAAGCAGTGGTGCAAATATTGCAGATTATGTAGCTCGGAAGACGGTTCAAGCTGGCAAGTTTTTAGAGCCTGTTAAAGTGGTGGCACAAGTTCTCATGTACCCATTTTTTATTGGAACTGTCCCTACACACTCAGAGATCAAACTAGCTAACTCATATTTTTATGACAAAGCTACATGTCTTTTGGCATGGAAATTGTTTTTACCTGAGGAAGATTTCAATTTGGACCATGTTGCAGCCAACCCTCTCATTCCTGGCAGGGAACCACCTTTGAAACTAATGCCTCCAACATTAACAATAGTGGCAGAACTTGACTGGATGAAAGATCGTGCAATTGCATATTCAGAGGCGTTGAGAAAAGTGAATATTGATGCTCCAGTCCTGGAGTATAAGGATGCAGTTCATGAATTTGCATCACTCGATATGTTAGTAAAATCTAGACAGGCAGAAGTATGTGCAGAGGACATGGCTATTTGGATAAAGAAGTACATCTCTATCAAGGGCCATGAATTTTCTTATTGATAGGTGCTGTACATTTTGAAGACAAATATCCACATTGTGCATGTTCTTTGAAGCTCTTTTACATTGAGTTTTTCATCAATCACGAGATTCAAACTTCTTTTGTCGGCTAATGAGGATGAGTGATTGTGAGATAATTTATGCATTTGTACATTTGTAATAACCAATTTGACGAGGTTCCTCCACATTGTTTGCGGATATTGTCTATATTGCATTTGTGAATTTTTTTGTAAGCTATGATCACATGGATGATGGTGGCTACCACGGTTCATGCTGCTTTACCATCATTATTCGTTAAGAATAATGTGCCAATGTCGAAGGAAACTTGTTCTATTGTTTCTAGTAGACTCTGTTCTTGTTTGATCTTTATGCGGGATATTTCCTGCTCAAGGTCATACATCATCTTGAGCTCATGGTCTAATGGTTAATCACCATGGAAACATATCTGGGGTGTTAAGATCCTCGTGCTTATTCACAATGTGACGGCCAATCTAGGTTGGCTAGCTGTTATTTCTTGTGCATCAACCTATAATGTTTGCTCTTTCCTTGGAATGACTTTGAATAGATTTCCTATTGCCAAAGCGTTCCAAGCCTGAGTTCGTAAATGAATTGTTTTAAGTAGAACTATGCCTTCTACTTCAGGTGTTTTATAATTTGTAATCTCTTTAGTTGATGGAAATTGCAATAAAAGGAACATGCCACAAGGGGGCTACATCTTGTTCAT

Ace file of the UniGene sp_v1.1_unigene19224

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CXE carboxylesterase n=1 Tax=Actinidia deliciosa RepID=Q0ZPU8_ACTDE	-	-	56%
FL-Next	tr=PrMC3; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	31%
Blast2go	protein	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on ester bonds, Carboxylic ester hydrolases.	EC:3.1.1.-	-	0.0	75%

Source	KEGGs	Term	Type	Identity
Blast2go	Ascorbate and aldarate metabolism	00053		75%
Blast2go	Bisphenol degradation	00363		75%
Blast2go	Glycerophospholipid metabolism	00564		75%
Blast2go	Toluene degradation	00623		75%
Blast2go	Aminobenzoate degradation	00627		75%
Blast2go	Retinol metabolism	00830		75%
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960		75%
Blast2go	Carboxylesterase.	EC:3.1.1.1	-	75%

Source	KEGGs	Term	Identity
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	75%
Blast2go	Drug metabolism - other enzymes	00983	75%
Blast2go	Metabolic pathways	01100	75%
Blast2go	Biosynthesis of secondary metabolites	01110	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	75%
Blast2go	carboxylesterase activity	GO:0004091	Molecular Function	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9ZSE0

Fln msg: your sequence is longer than subject: 516 - 319

Fln protein: MPSVGVQLYSVFFKLLLKHRLQNQAQVADHDAVQGVTSRSGSGNVPANAAFVDGIATKDIHIDALTNLSIRIFLPESSLLPEPVSKQSLTGLKDAGVGSDRRTEELDTNRGFRRSSYGGAIDTSHGEGNRRSSYGGIGEKERSSMNERLRNGIEATGYITQKEGFQPNGGTRLGHDGTEFETVRSRSGADAGKEKRVEAGNYKGYLPKNLESVNRRLPIIFQFHGGGFVAGSKDSSANDFFCRRLAKVCDAIVIAVGYRLAPENKFPAAFDDGFKAVQWLAKQANLAECNKSFSHVPKGYLRNDLDVYRVDSHREILDTFGASLVEPWLAAHGDPSRCVLLGVSSGANIADYVARKTVQAGKFLEPVKVVAQVLMYPFFIGTVPTHSEIKLANSYFYDKATCLLAWKLFLPEEDFNLDHVAANPLIPGREPPLKLMPPTLTIVAELDWMKDRAIAYSEALRKVNIDAPVLEYKDAVHEFASLDMLVKSRQAEVCAEDMAIWIKKYISIKGHEFSY*

Protein Length: 517

Fln nts: CGTCGTGACCTTGGTGTCACTCCAAGTGTTTTCAATGTTGTCAAATCCATGATTCTCACCACCGAGGTTGGTATCAGTAAATGAATGGGCGCTGTCGCTTGTTGTACCGAGCTAGCTGGATAGCCAGGTCAAATAATTGTGGCGTATCATATTGTCACGCTTCTTGTTTTTAAAACTAACTTTGAATCTTTGTCATTGAATATTGATCCGGGTGCAGCCCAGACTTGAATTGAATTCAACAGTAGTTGTTGCCATTTCTCCACTCCTGATATTCTAGAAGCAGCAACCATTAATGGCCTCATGCTGTTTGCCTTCTTGCTTTCTCGGTGTTGAAACAGTCTCTATATTGGGGCTCTTCGTCTTTTCTTGTATTCCTCCTTTCTAATCTTTTGGGTGCCTACCTATATTATTTGTCTCTTCACATTCCTGCCCAACCATTCAATTTCAGATCTGGGAGGCCTTATCGATAAAGGGTGCTCCCATCAAAATCCAGGGTGCCCATCAACACACATATTTCTGCAGGGCCTAATCTGCAAATTTCTGTGTTTCAGCAATCCTTTTTAAGCTTTTGCATTAAGAAATCATTGTATAAGGTTCGATCTCTGCATTTCACTGCTTCCGCATTCAATTCTTGCATTAACTGCATTAAAATAGGTTCCGACAAGCCCTTCTAATTTCCTATCTTTGCATGGATTAATTTTGAATCCATGGGGGACCCTTTATATTCCAATTGTGAATGATAAGGATGCAATCAAGTTTCGATTATCCCACAACAAATATCGGATCTTTTGTACCGAATTCTTCGCTCTGTAAGTGTCCTGCATAGGGAGGATTAGATCTATCAGAG_-_ATGCCCAGCGTCGGTGTGCAATTGTACAGTGTTTTCTTCAAGCTTTTACTCAAGCACAGGCTCCAGAACCAAGCGCAAGTGGCCGATCATGATGCTGTGCAAGGGGTTACATCGAGGTCTGGATCAGGCAACGTGCCTGCAAATGCTGCATTCGTCGATGGGATTGCGACCAAGGACATACACATAGATGCCCTCACAAATCTGTCGATCAGGATTTTTCTTCCAGAGTCATCTTTGTTACCTGAACCGGTATCTAAACAGTCCCTGACTGGTCTGAAAGATGCAGGGGTGGGATCTGATAGGAGAACAGAGGAATTAGACACTAATAGAGGCTTTAGGAGGAGCAGCTATGGAGGGGCCATCGACACAAGTCATGGGGAGGGCAATAGGAGGAGCAGCTATGGAGGTATTGGCGAGAAAGAGAGGAGTTCCATGAACGAAAGGCTTAGGAATGGGATTGAAGCAACAGGTTATATAACACAGAAGGAGGGCTTTCAGCCGAATGGGGGTACTAGATTGGGGCATGACGGCACAGAATTTGAGACAGTGCGGTCTAGATCTGGGGCAGATGCGGGGAAAGAGAAGAGAGTAGAAGCCGGGAATTACAAAGGCTACCTGCCCAAAAATTTAGAGTCCGTTAACCGGAGATTGCCCATCATCTTTCAGTTCCACGGTGGGGGGTTTGTCGCGGGTAGTAAGGATTCTTCTGCCAATGATTTTTTCTGCAGGAGGTTGGCCAAAGTGTGCGATGCAATAGTTATAGCTGTAGGATATCGCCTTGCGCCGGAGAACAAGTTCCCAGCAGCATTCGATGATGGATTCAAGGCTGTTCAGTGGTTGGCGAAACAGGCCAATCTTGCCGAGTGCAACAAGTCTTTTTCGCATGTACCCAAGGGTTATCTTCGAAATGATTTGGATGTTTACAGAGTAGATTCTCATCGGGAAATTCTCGACACATTTGGAGCTTCTTTGGTAGAGCCATGGCTCGCGGCCCACGGAGATCCTTCCAGGTGTGTACTTCTTGGAGTAAGCAGTGGTGCAAATATTGCAGATTATGTAGCTCGGAAGACGGTTCAAGCTGGCAAGTTTTTAGAGCCTGTTAAAGTGGTGGCACAAGTTCTCATGTACCCATTTTTTATTGGAACTGTCCCTACACACTCAGAGATCAAACTAGCTAACTCATATTTTTATGACAAAGCTACATGTCTTTTGGCATGGAAATTGTTTTTACCTGAGGAAGATTTCAATTTGGACCATGTTGCAGCCAACCCTCTCATTCCTGGCAGGGAACCACCTTTGAAACTAATGCCTCCAACATTAACAATAGTGGCAGAACTTGACTGGATGAAAGATCGTGCAATTGCATATTCAGAGGCGTTGAGAAAAGTGAATATTGATGCTCCAGTCCTGGAGTATAAGGATGCAGTTCATGAATTTGCATCACTCGATATGTTAGTAAAATCTAGACAGGCAGAAGTATGTGCAGAGGACATGGCTATTTGGATAAAGAAGTACATCTCTATCAAGGGCCATGAATTTTCTTATTGA___TAGGTGCTGTACATTTTGAAGACAAATATCCACATTGTGCATGTTCTTTGAAGCTCTTTTACATTGAGTTTTTCATCAATCACGAGATTCAAACTTCTTTTGTCGGCTAATGAGGATGAGTGATTGTGAGATAATTTATGCATTTGTACATTTGTAATAACCAATTTGACGAGGTTCCTCCACATTGTTTGCGGATATTGTCTATATTGCATTTGTGAATTTTTTTGTAAGCTATGATCACATGGATGATGGTGGCTACCACGGTTCATGCTGCTTTACCATCATTATTCGTTAAGAATAATGTGCCAATGTCGAAGGAAACTTGTTCTATTGTTTCTAGTAGACTCTGTTCTTGTTTGATCTTTATGCGGGATATTTCCTGCTCAAGGTCATACATCATCTTGAGCTCATGGTCTAATGGTTAATCACCATGGAAACATATCTGGGGTGTTAAGATCCTCGTGCTTATTCACAATGTGACGGCCAATCTAGGTTGGCTAGCTGTTATTTCTTGTGCATCAACCTATAATGTTTGCTCTTTCCTTGGAATGACTTTGAATAGATTTCCTATTGCCAAAGCGTTCCAAGCCTGAGTTCGTAAATGAATTGTTTTAAGTAGAACTATGCCTTCTACTTCAGGTGTTTTATAATTTGTAATCTCTTTAGTTGATGGAAATTGCAATAAAAGGAACATGCCACAAGGGGGCTACATCTTGTTCAT

Fln Alignment:

sp_v1.1_unigene19224___ADAGKEKRVEAGNYKG-----YLPKNLESVNRRLPIIFQFHGGGFVAGSKDSSANDFFCRRLAKVCDAIVIAVGYRLAPENKFPAAFDDGFKAVQWLAKQANLAECNKSFSHVPKGYLRNDLDVYRVDSHREILDTFGASLVEPWLAAHGDPSRCVLLGVSSGANIADYVARKTVQAGKFLEPVKVVAQVLMYPFFIGTVPTHSEIKLANSYFYDKATCL----LAWKLFLPEEDFNLDHVAANPLIPGREPPLKL-MPPTLTIVAELDWMKDRAIAYSEALRKVNIDAPVLEYKDAVHEF
Q9ZSE0_______________SDGARSKDVVIDPVKGISARLFLPAELP-LAQKLPLLFYFHGGGFCIGTTAWEGYHLFLSLLAATTRALVISVDYRLAPEHRLPAAYDDCFDAVEWVAS--------------------------------------GGGKAEPWLDAHADYGRCFLAGESAGGNIAHVVGSRT--ADQDLGPLKIRGLIVIHPYF----GSEERIECEKVAAGDDAAALELNDLFWRLALPPGS-DRDYPTCNPRGPRSADLRKVPLPPVLVTVAGLDLLKTRGLLYYELLQSCGKEAELMEAEGEIHAY

SNPs (tot: 66)

Position	A %	C %	G %	T %	Probability
28	66	33			0.997452
34			33	66	0.997452
35	33			66	0.997452
36		33		66	0.997452
38	66			33	0.997452
39	66			33	0.997452
40			33	66	0.997452
42		33		66	0.997452
49	66	33			0.997452
367			12	87	0.992554
368	12			87	0.992554
369		12		87	0.992554
374			12	87	0.992554
375	87	12			0.992554
380	25			75	1.0
382	12	87			0.992554
388	71		28		1.0
399			16	83	0.994512
400	16		83		0.994512
433		14	85		0.993533
513	80		20		0.995493
632	80		20		0.995493
727			16	83	0.994512
1005	33		66		0.997452
1007		66	33		0.997452
1009	66		33		0.997452
1168	33			66	0.997452
1170	66		33		0.997452
1172	66		33		0.997452
1225		66		33	0.997452
1652		28		71	1.0
1654		71	28		1.0
1655		71		28	1.0
1660	71			28	1.0
1661		28	71		1.0
1662	28	71			1.0
1954		27		72	1.0
2063	20	80			0.995493
2065			20	80	0.995493
2066			20	80	0.995493
2067			20	80	0.995493
2128		12		87	0.992554
2574		85		14	0.999981
2691	83	16			0.999991
2692			16	83	0.999991
2697			16	83	0.999991
2699	83	16			0.999991
2700		16	83		0.999991
2701	83			16	0.999991
2702	83			16	0.999991
2703			16	83	0.999991
2704	83		16		0.999991
2705	83	16			0.999991
2709	18		81		0.999994
2728		18		81	0.999994
2731			18	81	0.999994
2732	18	81			0.999994
2733		18		81	0.999994
2734	81	18			0.999994
2738			18	81	0.999994
2739		18		81	0.999994
2741		81	18		0.999994
2744		18	81		0.999994
2747		18	81		0.999994
2869		86		13	0.999973
3083			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain