SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19180

Length: 2200 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene19180
ATGGGGGCTTTCGCACAAATGTATGGTGGAAGAAAGTTGTATTCCAAATAGACTTGGTCCCTGTTTTCCGCAGAAGGTATGTATTGTGTTACTCCCTATTGCTTCGGAGAAGGTATATATTGGATGACCTTCGCTATCGCTTGTGGGTTTCCTTATGGGTGCTTTGAGTATCATCACAGGAGATTTGCGCGGAAATTTCAGTATTTTGACATCCGGGGATGCTAATTGCCTCTAATTTCCCTGGATACGACTCATAGATTGGTCTGATAAAAGTTCAGGGTCCGATTTGAGGAGGGCATTGGAGGGCTTTTGATTAATCAGGATCCAGGATGTATAGCAATTTCAAGGAGCAGGCCATCGAGTATGTTCGGCAGGCAGTGCAGGAGGACAACGCAGGCAATTATGCCAAGGCATTTCCCCTCTACATGAATGCCCTCGAATACTTCAGAACCCATCTCAAATATGAGAAAAACCCCAAGATCAAGGAGGCCATCACCCAGAAATTCACAGAGTACCTGAGGAGGGCGGAGGAGATCCGAGTTGTGTTGGATGAGGGGACGAATTCTAGGCCTACTGCCAATGGGGATGCGGCCGTGGCCACCAAGCCCAAATCGAAGCCGGGAGCCAAAGGGGATGGAGATGGGGATGGGGAGGATCCGGAGCAGGCCAAGCTCCGATCAGGTCTCAATTCGGCCATAATTCGAGAGAAACCGAACGTCAAGTGGACTGACGTGGCAGGCCTGGAAAGTGCCAAGCAGGCCTTGCAGGAGGCTGTCATCCTACCCGTCAAGTTTCCCCAGTTCTTCACAGGGAAACGAAAGCCCTGGAGAGCTTTTCTTTTGTATGGGCCTCCTGGTACAGGGAAGTCATATTTGGCAAAGGCTGTTGCAACTGAAGCAGATTCAACATTTTATAGTATTTCTTCTTCGGACCTTGTTTCAAAATGGATGGGTGAAAGTGAGAAGCTTGTTTCTAATCTATTTCAAATGGCTCGGGACTGTGCTCCATCAATCATATTTATTGATGAAATAGACTCCTTATGTGGGCAACGTGGAGAAGGTAATGAGAGTGAAGCTTCTCGACGAATAAAGACAGAACTTTTAGTACAAATGCAGGGTGTAGGAAACAATGATCAGAAAGTTCTTGTATTGGCGGCTACAAATACTCCTTATGCTCTGGACCAGGCTATTAGGAGGCGTTTTGACAAACGAATCTATATTCCTCTACCTGATCTGAAGGCAAGGCAGCATATGTTCAAGGTTCACCTGGGTGACACACCTAACAACCTGACAGAGGGTGACTTTGAGGATCTAGCACGGAGAACAGATGGTTTCTCTGGGTCTGATATTTCTGTTTGTGTGAAAGATGTATTATTTGAACCTGTACGTAAAACTCAAGATGCTATGTTCTTCAGCAAAGTGTCTACCGAAGACGGGGAGATGTGGGTGCCATGTGGTCCCCGACAACCTGGGGCTGTGCAAACCACTATGCAGGAACTTGCAGTTAAGGGTCTGGCTTCAAAGATTCTGCCCCCGCCGATTTCAAAGGCAGATTTTGACAAAGTCCTTGCAAGGCAGAGACCAACTGTTAGCAAGCACGACCTAGAAGTCCACGAGCGATTCACAAAGGAATTTGGTGAAGAGGGCTGACAAATTTTCTTTGTCAAGGTCTTCCAATTGTATTATTTCCATTATTCTCCGACCAGATTAGTGGCTTGTAACATCTGTCGGTTGTTCTGGATTCTTATAAAATTAATGGGCTTTCGTTGACCACGGGATACATCATTTATATGATCTGGTGGTATGTTTATCTTTCGTGGAGGCTATCTTCTGATTTTAATGATCCCCTTTTCGCGGTTTGCTCTTATTCAAATCTCAAAATTGTTACGAGGTATTTGTATATGAGAATTTGGGCTGGAACTAATCAAGTTAGCTAGCTCTTAAGTTATCCATCTCATGGGTATAAAAATATGGATCCTGTATTAGTAGCACGCAAATTAATTAAAACGGTGCTGTGGCTCCTTTGAAAGATTTTAGACTAGAAATCATATATATTGGTAGGAATCAAATTGCGTCGTCATGATTACTGTGGTTAAATCCTTTATTGATGTAATTGGGAAAAGATAACTGTATATATAATGCTAATCCAGCGTTTGCATTTATTACATTATGTAATGTAAAGCTGTTGCATTTAACGAACC

Ace file of the UniGene sp_v1.1_unigene19180

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	[O] COG0464 ATPases of the AAA+ class	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Microtubule-severing ATPase.	EC:3.6.4.3	-	0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	92%
Blast2go	endosome organization	GO:0007032	Biological Process	92%
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	92%
Blast2go	protein binding	GO:0005515	Molecular Function	92%
Blast2go	ATP binding	GO:0005524	Molecular Function	92%
Blast2go	microtubule-severing ATPase activity	GO:0008568	Molecular Function	92%
Blast2go	multivesicular body	GO:0005771	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Blast2go	AAA+ ATPase domain	IPR003593	-	92%
Blast2go	ATPase, AAA-type, core	IPR003959	-	92%
Blast2go	ATPase, AAA-type, conserved site	IPR003960	-	92%
Blast2go	MIT	IPR007330	-	92%
Blast2go	Vps4 oligomerisation, C-terminal	IPR015415	-	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2N1

Fln msg:

Fln protein: MYSNFKEQAIEYVRQAVQEDNAGNYAKAFPLYMNALEYFRTHLKYEKNPKIKEAITQKFTEYLRRAEEIRVVLDEGTNSRPTANGDAAVATKPKSKPGAKGDGDGDGEDPEQAKLRSGLNSAIIREKPNVKWTDVAGLESAKQALQEAVILPVKFPQFFTGKRKPWRAFLLYGPPGTGKSYLAKAVATEADSTFYSISSSDLVSKWMGESEKLVSNLFQMARDCAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPNNLTEGDFEDLARRTDGFSGSDISVCVKDVLFEPVRKTQDAMFFSKVSTEDGEMWVPCGPRQPGAVQTTMQELAVKGLASKILPPPISKADFDKVLARQRPTVSKHDLEVHERFTKEFGEEG*

Protein Length: 441

Fln nts: ATGGGGGCTTTCGCACAAATGTATGGTGGAAGAAAGTTGTATTCCAAATAGACTTGGTCCCTGTTTTCCGCAGAAGGTATGTATTGTGTTACTCCCTATTGCTTCGGAGAAGGTATATATTGGATGACCTTCGCTATCGCTTGTGGGTTTCCTTATGGGTGCTTTGAGTATCATCACAGGAGATTTGCGCGGAAATTTCAGTATTTTGACATCCGGGGATGCTAATTGCCTCTAATTTCCCTGGATACGACTCATAGATTGGTCTGATAAAAGTTCAGGGTCCGATTTGAGGAGGGCATTGGAGGGCTTTTGATTAATCAGGATCCAGG_-_ATGTATAGCAATTTCAAGGAGCAGGCCATCGAGTATGTTCGGCAGGCAGTGCAGGAGGACAACGCAGGCAATTATGCCAAGGCATTTCCCCTCTACATGAATGCCCTCGAATACTTCAGAACCCATCTCAAATATGAGAAAAACCCCAAGATCAAGGAGGCCATCACCCAGAAATTCACAGAGTACCTGAGGAGGGCGGAGGAGATCCGAGTTGTGTTGGATGAGGGGACGAATTCTAGGCCTACTGCCAATGGGGATGCGGCCGTGGCCACCAAGCCCAAATCGAAGCCGGGAGCCAAAGGGGATGGAGATGGGGATGGGGAGGATCCGGAGCAGGCCAAGCTCCGATCAGGTCTCAATTCGGCCATAATTCGAGAGAAACCGAACGTCAAGTGGACTGACGTGGCAGGCCTGGAAAGTGCCAAGCAGGCCTTGCAGGAGGCTGTCATCCTACCCGTCAAGTTTCCCCAGTTCTTCACAGGGAAACGAAAGCCCTGGAGAGCTTTTCTTTTGTATGGGCCTCCTGGTACAGGGAAGTCATATTTGGCAAAGGCTGTTGCAACTGAAGCAGATTCAACATTTTATAGTATTTCTTCTTCGGACCTTGTTTCAAAATGGATGGGTGAAAGTGAGAAGCTTGTTTCTAATCTATTTCAAATGGCTCGGGACTGTGCTCCATCAATCATATTTATTGATGAAATAGACTCCTTATGTGGGCAACGTGGAGAAGGTAATGAGAGTGAAGCTTCTCGACGAATAAAGACAGAACTTTTAGTACAAATGCAGGGTGTAGGAAACAATGATCAGAAAGTTCTTGTATTGGCGGCTACAAATACTCCTTATGCTCTGGACCAGGCTATTAGGAGGCGTTTTGACAAACGAATCTATATTCCTCTACCTGATCTGAAGGCAAGGCAGCATATGTTCAAGGTTCACCTGGGTGACACACCTAACAACCTGACAGAGGGTGACTTTGAGGATCTAGCACGGAGAACAGATGGTTTCTCTGGGTCTGATATTTCTGTTTGTGTGAAAGATGTATTATTTGAACCTGTACGTAAAACTCAAGATGCTATGTTCTTCAGCAAAGTGTCTACCGAAGACGGGGAGATGTGGGTGCCATGTGGTCCCCGACAACCTGGGGCTGTGCAAACCACTATGCAGGAACTTGCAGTTAAGGGTCTGGCTTCAAAGATTCTGCCCCCGCCGATTTCAAAGGCAGATTTTGACAAAGTCCTTGCAAGGCAGAGACCAACTGTTAGCAAGCACGACCTAGAAGTCCACGAGCGATTCACAAAGGAATTTGGTGAAGAGGGCTGA___CAAATTTTCTTTGTCAAGGTCTTCCAATTGTATTATTTCCATTATTCTCCGACCAGATTAGTGGCTTGTAACATCTGTCGGTTGTTCTGGATTCTTATAAAATTAATGGGCTTTCGTTGACCACGGGATACATCATTTATATGATCTGGTGGTATGTTTATCTTTCGTGGAGGCTATCTTCTGATTTTAATGATCCCCTTTTCGCGGTTTGCTCTTATTCAAATCTCAAAATTGTTACGAGGTATTTGTATATGAGAATTTGGGCTGGAACTAATCAAGTTAGCTAGCTCTTAAGTTATCCATCTCATGGGTATAAAAATATGGATCCTGTATTAGTAGCACGCAAATTAATTAAAACGGTGCTGTGGCTCCTTTGAAAGATTTTAGACTAGAAATCATATATATTGGTAGGAATCAAATTGCGTCGTCATGATTACTGTGGTTAAATCCTTTATTGATGTAATTGGGAAAAGATAACTGTATATATAATGCTAATCCAGCGTTTGCATTTATTACATTATGTAATGTAAAGCTGTTGCATTTAACGAACC

Fln Alignment:

sp_v1.1_unigene19180___MYSNFKEQAIEYVRQAVQEDNAGNYAKAFPLYMNALEYFRTHLKYEKNPKIKEAITQKFTEYLRRAEEIRVVLDEGTNSRPTANGDAAVATXXXXXXXXXXXXXXXXXXXEQAKLRSGLNSAIIREKPNVKWTDVAGLESAKQALQEAVILPVKFPQFFTGKRKPWRAFLLYGPPGTGKSYLAKAVATEADSTFYSISSSDLVSKWMGESEKLVSNLFQMARDCAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPNNLTEGDFEDLARRTDGFSGSDISVCVKDVLFEPVRKTQDAMFFSKVSTEDGEMWVPCGPRQPGAVQTTMQELAVKGLASKILPPPISKADFDKVLARQRPTVSKHDLEVHERFTKEFGEEG
A9P2N1_______________MYSNFKEQAIEYVRQAVQEDNAGNYAKAFPLYMNALEYFRTHLKYEKNPKIKEAITQKFTEYLRRAEEIRVVLDEGVGSRPSANGDAAVATKPKSKPGAKGDGDGDGEDPEQAKLRSGLNSAIIREKPNVKWTDVAGLESAKQALQEAVILPVKFPQFFTGKRKPWRAFLLYGPPGTGKSYLAKAVATEADSTFYSISSSDLVSKWMGESEKLVSNLFQMARDCAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPNNLTEGDFEDLARRTDGFSGSDISVCVKDVLFEPVRKTQDAMFFSKVSTKDGEMWMPCGPRQPGAVQTTMQELAVKGLASQILPPPISKADFDKVLARQRPTVSKHDLEVQERFTKEFGEEG

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
24	50		50		1.0
27			50	50	1.0
28			33	50	1.0
29			50	50	1.0
53	83		16		0.994512
123		11	88		0.923564
125	77		11	11	0.968132
126		88		11	0.923564
128	88			11	0.923564
129		88	11		0.923564
132	11			88	0.923564
133		88	11		0.923564
134		88	11		0.923564
135		88		11	0.923564
136			88	11	0.923564
137	77		22		0.999999
138		11		88	0.923564
139		88		11	0.923564
140	11		88		0.923564
141	6	33		60	1.0
143	6	6		60	1.0
144		20	80		1.0
146	13		6	80	0.999961
171			32	67	1.0
299		53		46	1.0
320		21		78	1.0
2078	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain