SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19179

Length: 886 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19179

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Xyloglucan galactosyltransferase KATAMARI1 homolog n=3 Tax=Oryza sativa RepID=KATAM_ORYSJ	-	-	9.0e-28	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Blast2go	xyloglucan galactosyltransferase	-	-	1.59273e-27	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	endomembrane system organization	GO:0010256	Biological Process	1.59273e-27	70%
Blast2go	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	1.59273e-27	70%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	1.59273e-27	70%
Blast2go	xyloglucan biosynthetic process	GO:0009969	Biological Process	1.59273e-27	70%
Blast2go	fucose biosynthetic process	GO:0042353	Biological Process	1.59273e-27	70%
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	1.59273e-27	70%
Blast2go	mitochondrion	GO:0005739	Cellular Component	1.59273e-27	70%
Blast2go	integral to Golgi membrane	GO:0030173	Cellular Component	1.59273e-27	70%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	1.59273e-27	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Exostosin-like	IPR004263	-	1.59273e-27	70%

Full-Lengther Next Prediction

SNPs (tot: 79)

Position	A %	C %	G %	T %	Probability
60		75	25		0.996473
61		75		25	0.996473
66			25	75	0.996473
67	25			75	0.996473
68		25		75	0.996473
70			16	83	0.994512
72		83	16		0.994512
73	66		16		0.988813
74		83	16		0.994512
75			66	33	1.0
78			66	16	0.988813
80	83	16			0.994512
81		16		83	0.994512
84			16	66	0.988813
85	16		83		0.994512
88			16	83	0.994512
89	83			16	0.994512
90		16		83	0.994512
136		11	88		0.923564
137			11	88	0.923564
139			11	88	0.923564
141		11		88	0.923564
142	88	11			0.923564
145		88	11		0.923564
147	88			11	0.923564
150	88	11			0.923564
151			88	11	0.923564
152	88	11			0.923564
275		85	14		0.993533
279		85		14	0.993533
284		83	16		0.994512
286	83			16	0.994512
289	16		83		0.994512
292	16		83		0.994512
294		12		87	0.992554
295			12	87	0.992554
298	87		12		0.992554
301		12	87		0.992554
302	87	12			0.992554
305		87	12		0.992554
307		12		87	0.992554
312		87		12	0.992554
314	12			87	0.992554
316			87	12	0.992554
318	12		87		0.992554
402	87			12	0.992554
403	87	12			0.992554
407		12	87		0.992554
408	12	87			0.992554
410	87			12	0.992554
412	87		12		0.992554
420		87		12	0.992554
421	87	12			0.992554
456		14		85	0.993533
457			14	85	0.993533
459	85	14			0.993533
460	85		14		0.993533
464	85	14			0.993533
468	85		14		0.993533
478	85			14	0.993533
557	66			33	1.0
561			33	66	1.0
562	33			66	1.0
563		33		66	1.0
571	66		33		1.0
591			12	87	0.992554
592			87	12	0.992554
594			12	87	0.992554
595		87		12	0.992554
596		87	12		0.992554
598		12		87	0.992554
600		87		12	0.992554
601	87			12	0.992554
603	87		12		0.992554
604	87	12			0.992554
605		12	87		0.992554
610	85			14	0.993533
611		14	85		0.993533
612	14			85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain