SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19173

Length: 362 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene19173
CGTCGTGACCTTGGCTGTCACTCAGATGATAAGAAACTTGATTGGAATGACTTCGTGTCCTTGGCTTTCACTCATTGTGTTATAAATGAAACACTTCGTTTGGTAAACTTTGCTCAAGGTGTGTACAAGGAAAATAAGGAAGACATCAAAGTGAAAGATTATGATATTCCTAAAGGCTCATTGATTTTTATTTCAACCATGGCCCCACATCTAGATGAAAACTTCTACTTCAAAGCTCATGAATTTAATCCATGGCGATGGGAATTTAATCAGGACATTTCAAATGAACCATTATTTATGCCTTTTGGAGTTGGGCCTAGACTTTGTCCAGGACATCATCTTACCAGACTTGAGTTATCTAT

Ace file of the UniGene sp_v1.1_unigene19173

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Abietadienol/abietadienal oxidase n=1 Tax=Pinus taeda RepID=C72B1_PINTA	-	-	9.0e-35	62%
FL-Next	tr=CYP720B9; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	c72b1_pinta ame: full=abietadienol abietadienal oxidase short= ame: full=cytochrome p450 720b1 ame: full=cytochrome p450 cypa	-	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	72%
Blast2go	iron ion binding	GO:0005506	Molecular Function	72%
Blast2go	membrane	GO:0016020	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Blast2go	Cytochrome P450	IPR001128	-	72%
Blast2go	Cytochrome P450, E-class, group IV	IPR002403	-	72%
Blast2go	Cytochrome P450, conserved site	IPR017972	-	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E5FA77

Fln msg: Distance to subject end: 39 aas, your sequence is shorter than subject: 120 - 478

Fln protein: RRDLGCHSDDKKLDWNDFVSLAFTHCVINETLRLVNFAQGVYKENKEDIKVKDYDIPKGSLIFISTMAPHLDENFYFKAHEFNPWRWEFNQDISNEPLFMPFGVGPRLCPGHHLTRLELS

Protein Length: 121

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATGATAAGAAACTTGATTGGAATGACTTCGTGTCCTTGGCTTTCACTCATTGTGTTATAAATGAAACACTTCGTTTGGTAAACTTTGCTCAAGGTGTGTACAAGGAAAATAAGGAAGACATCAAAGTGAAAGATTATGATATTCCTAAAGGCTCATTGATTTTTATTTCAACCATGGCCCCACATCTAGATGAAAACTTCTACTTCAAAGCTCATGAATTTAATCCATGGCGATGGGAATTTAATCAGGACATTTCAAATGAACCATTATTTATGCCTTTTGGAGTTGGGCCTAGACTTTGTCCAGGACATCATCTTACCAGACTTGAGTTATCTAT

Fln Alignment:

sp_v1.1_unigene19173___DDKKLDWNDFVSLAFTHCVINETLRLVNFAQGVYKENKEDIKVKDYDIPKGSLIFISTMAPHLDENFYFKAHEFNPWRWEFNQDISNEPLFMPFGVGPRLCPGHHLTRLELS
E5FA77_______________DNKKLDWNDYTSMKFTQCVINETLRLGNFAPGTYKENKEDIKVKDYDIPKGSLIFLSTMAPHLDENFYSNALKFDPWRWKLDQDISNDSLFVLFGAGPRLCSGYHLAKLELS

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
85	66	33			0.997452
86	66		33		0.997452
90	66			33	0.997452
91	66		33		0.997452
98		66	33		0.997452
102		16	16		0.988813
103			33	66	1.0
104	16	16		66	0.988813
105	16	33	50		1.0
106		33	66		1.0
107	50			50	1.0
108	50	16	16	16	0.988986
109	83		16		0.994512
110	66	16	16		0.988813
114		16	16	66	0.988813
115	16		83		0.994512
118		83		16	0.994512
119	83	16			0.994512
121		16	83		0.994512
122			83	16	0.994512
123		16		83	0.994512
124	16		83		0.994512
180		66	33		1.0
347		80	20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain