SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19167

Length: 1597 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19167

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transmembrane BAX inhibitor motif-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SFF7_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	glutamate binding protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	83%
Blast2go	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	83%
Blast2go	receptor activity	GO:0004872	Molecular Function	83%
Blast2go	glutamate binding	GO:0016595	Molecular Function	83%
Blast2go	integral to membrane	GO:0016021	Cellular Component	83%
Blast2go	mitochondrion	GO:0005739	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Inhibitor of apoptosis-promoting Bax1-related	IPR006214	-	0.0	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMB0

Fln msg:

Fln protein: MAKTLNGPYADLEMGSSSLYPSQPSEEIQLRWAFIRKIYSILTIQLLLTIAVASVVVFVRPVAHFFVSTPAGLALYILAIFIPLILIWPLYYYSQKHPVNYILLAAFTVFMGFSVGLTCAFTAGKIILESAILTAVVVVSLTLYTFWAARRGHDFSFLAPILFAGFMVLLVFILIQLIVPLGRLSVMIYGALASIIFSGFIIYDTDNLIKRYSYDEYIWAAVALYLDVINLFLSLLTLLRASDS*

Protein Length: 246

Fln nts: ATGGGGGAGAAAGTTTCGAGATCGAATCTCCCGGAGAAGTCGATTTAGGAATTTTCTAGTAAAACCCCATATACAAAAATTCGCAAAGAATGGAATTTAAAGTCCGTCGGTTTAACGTTAAACGGCAGCCCAGCTGACCTGTAATACATGAATTAGTTGTTTTAGCGTGCGTTAGGGTTTGCAGGCTGGAGTTTAATGGTGAATCTTGATCCGCAATTTCTCCTTTTAAGTTAACTTCCGCTTTTTGGTTTCTTCTGGGAGTACCTGTCTGAAGCAAGATTTCATTTGGTTTTCATCTCTAACTTTTAAGTTTCTCGTGTTTTTCACGGGGTTGTTTTTCGGTGCGTGTACGCGTGTATAAACCCACGGGACGGTTGAGTTGCTTCTCGATAAAGCAATACAGGCCATGCTCGCGGGGCTTCCAGGTTATTCCGCTTGTCCGCTCTTCTTGAACCATCCACAGAGGGCAGCAGAATCTTTGTAACCCTCTATAAATAGTGTGCAAGCGTGGCTCGTTTCTGTTTTGATTTGGCTTTCCAGGAGAACGATCTCTCTGCACAGTGACATAGGTTAACA_-_ATGGCGAAAACCCTTAATGGACCATATGCCGACCTGGAGATGGGGAGCTCGTCTCTCTACCCGAGTCAACCCTCCGAAGAAATTCAGCTCCGGTGGGCTTTCATAAGGAAAATATACTCGATTCTCACTATCCAACTGCTACTCACCATTGCTGTTGCTAGCGTTGTGGTCTTCGTACGACCGGTCGCGCATTTCTTCGTCTCTACTCCGGCCGGGCTCGCTCTGTACATTTTAGCTATCTTTATTCCCCTAATCTTGATATGGCCTTTGTATTACTACTCTCAAAAGCATCCTGTAAATTACATCCTTCTCGCAGCATTTACGGTTTTCATGGGGTTTTCTGTTGGATTAACATGTGCCTTTACAGCGGGGAAGATAATATTGGAATCGGCCATTCTGACGGCTGTGGTTGTTGTGAGTCTTACGCTCTATACATTCTGGGCAGCAAGGAGGGGGCATGATTTTAGTTTTCTTGCACCCATCCTCTTCGCTGGATTCATGGTGTTACTTGTTTTTATTCTGATTCAGCTAATCGTACCGCTGGGAAGGCTGTCGGTGATGATATATGGGGCTCTGGCGTCCATTATATTCAGTGGGTTCATAATTTATGACACAGATAATCTGATAAAGCGGTATTCATATGATGAATACATATGGGCGGCCGTTGCGCTGTATTTAGACGTTATCAATCTTTTCCTTTCTCTGCTCACGCTCCTGCGCGCCTCTGACAGTTAA___TCAGATCCACCTATCTGTACAGAGAATAATTTATTCTTTAAATTTGTATATGATTAATTACATACACTGGCTACCCTACTCTATACAGGCTCAGAGTAAATTAGCAGGGAATATCCTGTTTGGTTTGTACAGACCATGCTGAATGATCATCTGTAACTTAGTTGGGAGTTTTTGAAATTGCAGAGACTTTTTCACTGTTTTTAAAATTGTTAAAGTCGAAAAATAGAAAAGATGAAAATATAGATGAGTCCTTGGTGGTGAGGCGGTGAGATTGATTTAATTGGGC

Fln Alignment:

sp_v1.1_unigene19167___MAKTLNGPYADLEMGSSSLYPSQPSEEIQLRWAFIRKIYSILTIQLLLTIXXXXXXXXXXXXXXXXXSTPAGLALYILAIFIPLILIWPLYYYSQKHPVNYILLAAFTVFMGFSVGLTCAFTAGKIILESAILTAVVVVSLTLYTFWAARRGHDFSFLAPILFAGFMXXXXXXXXXXXXXXGRLSVMIYGALASIIFSGFIIYDTDNLIKRYSYDEYIWAAVALYLDVIN
B8LMB0_______________MAKTLPGPYADLETGNSALYPAQASDEIPLRWAFIRKIYSILTIQLLLTIAVASVVVFVRPVAHFFVSTPAGLALYIFAIIFPLILIWPLYYYSQKHPVNYILLATFTVFMGFSVGLTCAFTAGKVILESAILTAVVVVSLTLYTFWAAKRGHDFSFLAPILFAGFMVLLVFILIQIFIPLGRLSLMIYGALASIIFSGFIIYDTDNLIKRYTYDQYIWAAVALYLDVIN

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
297	75		25		0.996473
300			25	75	0.996473
301		75		25	0.996473
302			25	75	0.996473
304	75	25			0.996473
308			25	75	0.996473
309			25	75	0.996473
310	75	25			0.996473
311	75			25	0.996473
314		25		75	0.996473
315	25			75	0.996473
467	71		28		1.0
501		9		90	0.999872
505		90		9	0.999872
506	90		9		0.999872
508		9	90		0.999872
510			90	9	0.999872
519		9		90	0.999872
520	10			90	0.999898
549	89		10		0.999919
739		10		90	0.90298
750		11		88	0.923564
828		75		25	0.996473
830		75	25		0.996473
832	75		25		0.996473
834		25		75	0.996473
839	75	25			0.996473
841	75		25		0.996473
843		25	75		0.996473
844	25		75		0.996473
847	25			75	0.996473
884	60		40		1.0
887		60	40		1.0
889			40	20	1.0
890	40	20		40	1.0
893		80	20		0.995493
896	66	16		16	0.988813
897		16	83		0.994512
899	83		16		0.994512
900		20		80	0.995493
901			20	80	0.995493
902	20			60	0.99255
903	60	20			0.99255
905	20		80		0.995493
907		20		80	0.995493
909			20	80	0.995493
915		20	80		0.995493
916			80	20	0.995493
917		20	80		0.995493
918	20			80	0.995493
980		80	20		0.995493
1073	20			80	0.995493
1178			66	33	0.997452
1295		83		16	1.0
1390		80		20	1.0
1498	88	11			0.923564
1518	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain