SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19157

Length: 1464 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19157

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Microsomal signal peptidase 23 kD subunit, putative n=1 Tax=Ricinus communis RepID=B9RF33_RICCO	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	signal peptidase subunit family protein	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	signal peptide processing	GO:0006465	Biological Process	86%
Blast2go	peptidase activity	GO:0008233	Molecular Function	86%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	86%
Blast2go	cell wall	GO:0005618	Cellular Component	86%
Blast2go	integral to membrane	GO:0016021	Cellular Component	86%
Blast2go	signal peptidase complex	GO:0005787	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Signal peptidase 22kDa subunit	IPR007653	-	0.0	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMX1

Fln msg:

Fln protein: MHSFAYRSNALFTFGVTILAIMCIMVSVSDNFNTPSPQAQIEVLKINRFKRQQNGNDEVSLTMNISADLQSLFTWNTKQVFIFVAAEYETPKNVLNQVSLWDAIIPSKEHAKFSIPATNKYGFVDQGSNLRGQEFNLTVHWHVMPKTGYMYADKKVISGFRLPEEYRQ*

Protein Length: 170

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTTTTCGTCTTTTCCTCAACTTTACTCGATTTTCTTGTAAACGAAACTAAATTGAGTGAGGCTGCATTTGAGTTTTGGGTTTTGGCTTAGCGGGTTTGGTTTTGAATTGTCCTGTTACAGACCTTCCTGTCTCACTCTTTGTGGTTTCCGTTACTGCCGTTGGTTGTCCGGGGTTCTTACTCTGCAGGCCTCCTTTCATCTCATACCTTACATCATCGGCTGAAGAGAAGGAATTGACTAATTTATGGTATAAGACGTGTTAATTTGTGGTTAAATTGGAGCACTGGAGTGAATTGTGACTCCCGGAAGCCATAACTGGGATCGTGTTAATTGCGAGGAGAG_-_ATGCATTCATTTGCGTACAGGTCGAATGCTCTGTTTACATTCGGAGTAACTATTCTGGCCATCATGTGCATAATGGTCTCCGTCTCCGATAACTTTAACACGCCCTCGCCACAAGCGCAGATCGAGGTACTAAAGATTAATAGGTTTAAGAGGCAACAGAATGGAAATGATGAGGTTAGTTTGACAATGAATATCTCAGCTGATTTGCAGTCGTTGTTTACATGGAACACAAAACAGGTCTTTATCTTTGTAGCAGCAGAATACGAGACACCAAAAAATGTATTGAATCAGGTGTCGCTTTGGGATGCTATCATACCTTCAAAAGAACATGCAAAGTTTTCAATCCCTGCAACAAACAAATATGGCTTCGTTGATCAGGGAAGCAATCTACGTGGTCAGGAATTCAATTTGACAGTGCACTGGCATGTCATGCCAAAGACGGGTTATATGTATGCTGACAAAAAAGTGATATCGGGTTTCCGTCTGCCTGAGGAATATCGACAGTAA___ATTAATTTCAACAGTTACTACTGCTGCTTGTTATGGAATACTTAAATTTTGTGGAGGAAAATTCTCCAGCAAGAAAATTCTCTGTTCAATTCTCTTTTCTTCGTGCTTACTCTGCGAACTCTGGGTATACAGGACGTTTTATTATTTATTGAAGGGTTGCTAGGGGTCTCGCTACATATCTTTTGTCTGCCAAAATGACTGGGAAAGTGGTGATATAGAATGAGTGATATATGAGTTAGAATTATAAAGTTGAAAAGTGTGGCAAGCATGCACTTCTCGAATCTTGGACATATTACAATGTAATGTGGCTGGGTTACAACACTCTAGAAAGACCTCTCCAGCTAAAATATTGGGGTTGGGGGTATCTATTCTGTCAAAGTCAGCTAGGGCTTGCACTTGGCTTTAATGGCTTGAAAGTTGAAATAGCCTGCTTGCATGGGCATGATGGTTCATGAGGGGCAAAACATGACTCTGGGGGCATTTTAACCTTGGTGGGGGGTCTGAAACACTGCTAGCCTCCATTGACAATGTAGAATTATTTTTATTTGTTCTTTGAAGATAATCTATTGAAGATAACTCACTCCAGAAAT

Fln Alignment:

sp_v1.1_unigene19157___MHSFAYRSNALFTFGVTILAIMCIMVSVSDNFNTPSPQAQIEVLKINRFKRQQNGNDEVSLTMNISADLQSLFTWNTKQVFIFVAAEYETPKNVLNQVSLWDAIIPSKEHAKFSIPATNKYGFVDQGSNLRGQEFNLTVHWHVMPKTGYMYADKKVISGFRLPEEYR
A9NMX1_______________MHSFAYRSNALFTFGVTILAIMCIMVSVSDNFNTASPQAQIEVLKINRFKRQPNGNDEVSLTMNISADLQSLFTWNTKQVFIFVAAEYETAKNVLNQVSLWDAIIPSKEHAVFSIPATNKYGFVDQGSNLRGQEFNLTMHWHVMPKTGYMYADKKVISGFRLPEEYR

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
79		33		66	1.0
82	66	33			1.0
87		33	66		1.0
88		33	66		1.0
89		66		33	1.0
92		66	33		1.0
93	66	33			1.0
95			33	66	1.0
97		33	66		1.0
100		33		66	1.0
102		33		66	1.0
103	33			66	1.0
465		90	10		0.90298
466	11			88	0.923564
467			11	88	0.923564
469	88		11		0.923564
473		88	11		0.923564
585	75		25		0.996473
626		83	16		0.994512
720		20		80	0.995493
790		88		11	0.923564
791	88		11		0.923564
792		77		11	0.968132
793		11		88	0.923564
795	22		77		0.999999
797	77	22			0.999999
800			22	77	0.999999
805		77		22	0.999999
808	77	22			0.999999
809	77			22	0.999999
810		25	75		1.0
820	88		11		0.923564
1129	45		54		1.0
1458	33	66			0.997452
1459	33			66	0.997452
1460	33	66			0.997452
1462	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain