SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19150

Length: 1828 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19150

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9T9S4_RICCO	-	-	49%
FL-Next	sp=Receptor-like protein kinase THESEUS 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	49%
Blast2go	protein	-	-	65%

Source	GOs	Term	Type	Identity
Blast2go	regulation of unidimensional cell growth	GO:0051510	Biological Process	65%
Blast2go	post-embryonic development	GO:0009791	Biological Process	65%
Blast2go	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	65%
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	65%
Blast2go	binding	GO:0005488	Molecular Function	65%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	65%
Blast2go	chloroplast	GO:0009507	Cellular Component	65%
Blast2go	plasma membrane	GO:0005886	Cellular Component	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Malectin	IPR021720	-	0.0	65%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9LK35

Fln msg: Distance to subject end: 474 aas, your sequence is shorter than subject: 389 - 855

Fln protein: MISPRMGTLPILSWKGKLVLCTWGFLAAQSLSAFTPTDNYLIDCGASKNTTVEGQIFEADSYSSSLLSTSQDILATVQSANVPSDLYLTARIFTQRSSYTFQINLQGWHWVRLYFYPVPHGSYDLKSAIFSVTTDQFVLLHNFSINTDAKSTLYLFKEYLINVASDSLTLNFAPTGNSLAFINAIEVVSVPDELLSNQPVTLPAISSFVGLSGYALETAYRINVGGTLVTPINDTLGRTWVPDQSYLTSSGTAKSVSVLASSIKYTTTVTSEIAPNPVYATADEMANANVTNPNFNITWMFSVDPDFSYFVRMHFCDIVSSALYQLVFNVYINSETAINALDLSSKTLVLSTPYYTDFVVNASSESKNISVKCWSFEMLILLLPMPSLM

Protein Length: 390

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTCGGTTAAGTGCGAGATAAGGCAATGGGGGCTTATTGATATTTGGATTTTGTATTCATGTCCCTTGGTATGTGGGTTCTGATTTAGAACAATCTAAATCTGGATTCACATGCAGGCATTGATAATAGTATTGGGCATTGCGAAATTTTGTGTGTACATCTTAGGAGATTGGGTTCAGGGTCCATCCCCATTGTCATATTGCAGTTAGGCTTTTTGTAGTTTATGATTGAAGGACACCATGATCTGAATCTTATTTTATTCTTGTTCCTTGAAAAACATTCAGGCCTGGTTTGAGTTGCATTGCTAGGGTGTTGGTACGTCCGTCTGCACAATCAGTGCTCGTTACGGTGGTTGGGGATATTGATGTGTTTGCAGAGAGGGTGCCCATTTCCAAAACAGGCCTTTCAGGGATATTGTCTGCAAAGCATTTGACAAAAGGGCTTCCGTGCTGGGTTTTTGGTTACCCAAATAGTGCAGACATTGTTCAAATTGGCCAAACATCGGAATTCAAGCTGCCAACTGTTGGCATCTCCGAAGACTTTGTATCTAGAGCAACAGGCTGGAGGGTTTCTGTTGCCTGGTCTGGGATACTAGGGGAGAGGAGGAAAAATTGAGAGTAGTAGTTCTCGACAAT_-_ATGATCAGTCCGAGGATGGGCACCCTGCCCATCCTCTCGTGGAAGGGGAAACTTGTGCTCTGTACATGGGGTTTTCTAGCTGCTCAATCTCTATCTGCCTTCACTCCAACAGACAATTACTTAATTGATTGCGGCGCATCAAAAAACACCACCGTTGAAGGGCAGATCTTTGAGGCGGATTCGTACTCATCATCCCTTCTTTCCACAAGCCAGGATATCCTGGCCACTGTTCAGAGCGCCAACGTTCCTTCGGATCTCTATTTGACAGCTAGAATCTTTACTCAGCGCTCCTCTTACACCTTCCAAATTAATCTGCAAGGCTGGCACTGGGTACGTCTGTATTTCTATCCTGTTCCACACGGTAGCTATGATCTTAAATCTGCAATATTTTCTGTTACAACAGATCAATTCGTTCTCTTGCACAACTTCAGCATCAACACAGATGCAAAGAGTACTCTGTATTTGTTTAAGGAGTACCTCATCAATGTGGCCTCTGATAGCTTGACATTGAACTTTGCTCCTACGGGCAATTCACTTGCATTCATAAATGCCATCGAGGTTGTTTCAGTTCCAGATGAGTTGTTGTCTAACCAGCCTGTTACCTTACCTGCTATTTCTTCTTTTGTTGGGCTCTCTGGATATGCTTTGGAGACAGCATACAGGATCAATGTTGGGGGTACACTGGTCACGCCTATCAATGACACTCTTGGTAGAACTTGGGTACCTGATCAGAGTTATTTGACTTCTAGTGGTACTGCCAAATCTGTCAGTGTCCTTGCCAGCAGCATTAAGTACACCACAACAGTCACTTCAGAGATTGCCCCTAACCCTGTCTATGCCACAGCAGATGAGATGGCAAATGCAAATGTGACCAACCCCAATTTTAACATCACTTGGATGTTTTCTGTGGATCCAGATTTTAGCTATTTTGTTCGTATGCACTTCTGTGATATTGTGAGCTCAGCTCTCTACCAGTTGGTATTTAACGTCTATATTAATAGCGAAACTGCCATCAATGCACTCGATCTTTCTTCGAAGACATTGGTCTTGTCTACTCCATATTACACAGACTTTGTGGTGAATGCTTCGTCTGAATCAAAAAACaTATCTGTCAAGTGTTGGTCCTTCGAAATGTTGATACTATTACTCCCAATGCCATCCTTAATGG

Fln Alignment:

sp_v1.1_unigene19150___FLAAQSLSAFTPTDNYLIDCGASKNTTVEGQIFEADXXXXXXXXXX--QDILATVQSANVPSDLYLTARIFTQRSSYTFQINLQGWHWVRLYFYPVPHGSYDLKSAIFSVTTDQFVLLHNFSINTDAKSTLYLFKEYLINVASDSLTLNFAPTGNSLAFINAIEVVSVPDELLSNQPVTLPAISSFVGLSGYALETAYRINVGGTLVTPINDTLGRTWVPDQSYLTSSGTAKSVSVLASSIKYTTTVTSEIAPNPVYATADEMANANVTNPNFNITWMFSVDPDFSYFVRMHFCDIVSSALYQLVFNVYINSETAINALDLSSKTLVLSTPYYTDFVVNASSESKNI
Q9LK35_______________YTTTTSSALFNPPDNYLISCGSSQNITFQNRIFVPDSLHSSLVLKIGNSSVATSTTSNNSTNSIYQTARVFSSLASYRFKITSLGRHWIRLHFSPINNSTWNLTSASITVVTEDFVLLNNFSFNNFNGS--YIFKEYTVNVTSEFLTLSFIPSNNSVVFVNAIEVVSVPDNLIPDQALALNPSTPFSGLSLLAFETVYRLNMGGPLLTSQNDTLGRQWDNDAEYLHVNSSVLVVTANPSSIKYSPSVTQETAPNMVYATADTMGDANVASPSFNVTWVLPVDPDFRYFVRVHFCDIVSQALNTLVFNLYVNDDLALGSLDLSTLTNGLKVPYFKDFISNGSVESSGV

SNPs (tot: 84)

Position	A %	C %	G %	T %	Probability
262	88		11		0.999952
263		88		11	0.999952
265	88		11		0.999952
269		11		88	0.999952
273	87		12		0.999964
274	87	12			0.999964
276		87	12		0.999964
278		12		87	0.999964
280		14		78	0.999974
282		14		85	0.999981
283	14			85	0.999981
304	86		13		0.999973
306		12		87	0.999964
307		87	12		0.999964
308	87			12	0.999964
310	12		87		0.999964
317			12	87	0.999964
319		12	87		0.999964
322		12		87	0.999964
324		12	87		0.999964
325	12	87			0.999964
416			11	88	0.923564
417		88	11		0.923564
420	87			12	0.992554
421	87		12		0.992554
422	87			12	0.992554
425		12	87		0.992554
426			88	11	0.923564
428	11	88			0.923564
564	66			33	1.0
719		80	20		0.995493
726		40		60	1.0
728		20		80	0.995493
729			80	20	0.995493
730		20	80		0.995493
731	20		80		0.995493
896	88	11			0.923564
900		88		11	0.923564
901		88	11		0.923564
903	88	11			0.923564
905			88	11	0.923564
907			11	88	0.923564
908		88	11		0.923564
913	11		88		0.923564
914		11	88		0.923564
934	90	10			0.90298
935	90		10		0.90298
938			10	90	0.90298
940			10	90	0.90298
943		10		90	0.90298
944		90		10	0.90298
945	90			10	0.90298
951		90	10		0.90298
953	10			90	0.90298
956		10		90	0.90298
971	88	11			0.923564
972	88		11		0.923564
977		88		11	0.923564
978	88		11		0.923564
980		11	88		0.923564
981		11	88		0.923564
982		88		11	0.923564
987	88			11	0.923564
988		88	11		0.923564
990		11	88		0.923564
991	11		88		0.923564
992		11	88		0.923564
996	11		88		0.923564
1054		12		87	0.992554
1060	90			10	0.90298
1061	90	10			0.90298
1062	10	90			0.90298
1262	80			20	0.995493
1264		80	20		0.995493
1265		20		80	0.995493
1268		75	25		0.996473
1272	25	75			0.996473
1274	66		33		0.997452
1275	33			66	0.997452
1276		33		66	0.997452
1277	33			66	0.997452
1278		66	33		0.997452
1279			33	66	0.997452
1280		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain