SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19139

Length: 2131 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene19139
CGTCGTGACCTTGGCTGTCGTGACCTGGCTTACTCATTTTCGGGCAAGGTGGCTGTGAAAACGTTATACTCCAATTCTAGAATAACTGTTCTTAAATCCTACATGCGTAGGGTTTTTATAAAGACCGAAATATTTGTATGACCTGACAAATGCATTCTTTGTGACCTGACAGATGCATTCATATCTTTCCAATCGCCAATGAAGCCATCCAACGTTCTGTTAAAATACCAAATTACACAGACCACTCAGCTCCACTGGTATCATTGAAGAATACAGGCTGCCTGTTTTTCGGAAAAAATACAGATTTCCAAAATTAATGTCCATGTGTTCGTCTAATTTCGTGAATTCATATGGGCCGTAATTCTCTCAATTTTGTTAAACCCCAGTAAATTTATCACGGTTGGGATAAATTATATTAGGATATTGGGAGCCCGCATTAACCCTAGCTTCTCTGTTCCACACTCTTTTCTCCGTTTCTCTCGACCTCATTTCTGCATTTCGATCCCTTTGCCCTCCTGCGGAAATGTTCAAAAACAGGTTACAAGAGTACGCCCAGAAGACTTCTTTGCCTTTGCCAGTTTACACCACCGTAAATGAAGGCCAAGATCATCTTCCTGAGTTCAAGTGCAGCGTGACAGTGAGCGGCACACGATATGATTCGCCTCCGGGGTTTAAATATAAGAAGGAAGCAGAGAACGCCGCCGCTCAGGTAGCGGTTGAAGATTTGCGTAAGCGGGGGTTGGATATCCACTTTAAAGAGACAAGACTACTCAAGAACGTGCTCAGCGAGCTTGCTGTAAAGAAGAACATTCCACTTCCTACTTATCAATTTACACAGGAAGGAATTGCACACTGCCCAAATTTTACAGCAACTGTACAGATTAACGGGGAGTCGTACACCGGAGCTCCTGGATACAGTAAGAAGGAGGCCGCAAGAAACGCTGCATATGAAGCAATCCGATCAATTCGCACCCAAGATTGCAACTCTTTTCCACAGATTGAACTTGATGATGAAACCGAACAAAACAATGATTCTAAGCAGGAATTCAAGGTCACCAATGCTGTATCAAAGCTACCTACTGATAACAGTACATCTAATAATCAACTATTGGTAGGAACGGGTTCTCATTCAGCTGAAAATACAGAAAAGTTGAACGTTAAGAATGTTCCTACTGTTCCAGAAAAGATAAATGTGGAGAACCCATGTGAAGTTGGAGGGGCTTCAGAAAAATCAATGGTGAAGGATTCGGGTGAAGTTGAAAATGGTAAGTCAAGTATAAATGAAGCAAATCCAGGTTTAGCACCTGTAGAAAAGCCTCAACAGGATCCTATACTTGTTGAACAACATGGATTGAAAGAGGAAATGACAGATCTCATTGAAAATAAGGAACATGGATTTAAGCAGCTTGAAGGGATGCAACAAGGCAGTCAAGAGGTTGTTTTAACAGAATCGATTGTCAAGAGGATTAGAAGTGAACATGAGGATGCTGAACATACGTCTGAGAGAAAGAAAAAACTTAAAAAGAAGAGCAAGGCCAAAATGAGGAAGAGTGATGGCACAGCTTGATGCAGTCAAGAGAGTTCATTTTCAGTCTGCCTGGCATTGGTTTGTTCTCTTGCAAGCAAGGTCTTGGTTTGAACTACGCACTTGGGCATCTGTCACAATTTTGTTGTTGTCTTAGTTTCAACTGGCACTCTGGCAGCTGTCACAATTTTGTTTTCTTAGTTTCAACTAGGCGCTTCGGCATCTGTCACAATTTTGTTGTCCTTGTTATGCTGATGGCGTTGATGACTTTACCCAATTATGTAAATAAATTAACTGATCTGTTAGAATGTCAGGAGAAAGATGGACATTTTTGCAGATATTGATTATGTTTTTCTGCATTGCGTATACAAACACGTGTCTATATATAGGAATGCTTATTTTACTGGGTAAACTTCATTGGATTCAAAACTTCAACCGTTGGTCCCATAGAAGAGATTCTGCATCTTAATTATCCATCGTAACATAATCTCTGGATGGTTAATGTTTTCGTTTCTACATTCTACTAAGAGGTTTTCTATCACACTGAACATTGGAAAGTAGTGCATGTTGCTTTTATTTGCGCCACTTCGCAGTGAGTGACAGGCC

Ace file of the UniGene sp_v1.1_unigene19139

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DRB2; DRB2 (DSRNA-BINDING PROTEIN 2); double-stranded RNA binding	-	-	8.0e-21	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	dsrna-binding protein 2	-	-	0.0	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Double-stranded RNA-binding	IPR001159	-	0.0	59%
Blast2go	Double-stranded RNA-binding-like	IPR014720	-	0.0	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUQ0

Fln msg:

Fln protein: MFKNRLQEYAQKTSLPLPVYTTVNEGQDHLPEFKCSVTVSGTRYDSPPGFKYKKEAENAAAQVAVEDLRKRGLDIHFKETRLLKNVLSELAVKKNIPLPTYQFTQEGIAHCPNFTATVQINGESYTGAPGYSKKEAARNAAYEAIRSIRTQDCNSFPQIELDDETEQNNDSKQEFKVTNAVSKLPTDNSTSNNQLLVGTGSHSAENTEKLNVKNVPTVPEKINVENPCEVGGASEKSMVKDSGEVENGKSSINEANPGLAPVEKPQQDPILVEQHGLKEEMTDLIENKEHGFKQLEGMQQGSQEVVLTESIVKRIRSEHEDAEHTSERKKKLKKKSKAKMRKSDGTA*

Protein Length: 349

Fln nts: CGTCGTGACCTTGGCTGTCGTGACCTGGCTTACTCATTTTCGGGCAAGGTGGCTGTGAAAACGTTATACTCCAATTCTAGAATAACTGTTCTTAAATCCTACATGCGTAGGGTTTTTATAAAGACCGAAATATTTGTATGACCTGACAAATGCATTCTTTGTGACCTGACAGATGCATTCATATCTTTCCAATCGCCAATGAAGCCATCCAACGTTCTGTTAAAATACCAAATTACACAGACCACTCAGCTCCACTGGTATCATTGAAGAATACAGGCTGCCTGTTTTTCGGAAAAAATACAGATTTCCAAAATTAATGTCCATGTGTTCGTCTAATTTCGTGAATTCATATGGGCCGTAATTCTCTCAATTTTGTTAAACCCCAGTAAATTTATCACGGTTGGGATAAATTATATTAGGATATTGGGAGCCCGCATTAACCCTAGCTTCTCTGTTCCACACTCTTTTCTCCGTTTCTCTCGACCTCATTTCTGCATTTCGATCCCTTTGCCCTCCTGCGGAA_-_ATGTTCAAAAACAGGTTACAAGAGTACGCCCAGAAGACTTCTTTGCCTTTGCCAGTTTACACCACCGTAAATGAAGGCCAAGATCATCTTCCTGAGTTCAAGTGCAGCGTGACAGTGAGCGGCACACGATATGATTCGCCTCCGGGGTTTAAATATAAGAAGGAAGCAGAGAACGCCGCCGCTCAGGTAGCGGTTGAAGATTTGCGTAAGCGGGGGTTGGATATCCACTTTAAAGAGACAAGACTACTCAAGAACGTGCTCAGCGAGCTTGCTGTAAAGAAGAACATTCCACTTCCTACTTATCAATTTACACAGGAAGGAATTGCACACTGCCCAAATTTTACAGCAACTGTACAGATTAACGGGGAGTCGTACACCGGAGCTCCTGGATACAGTAAGAAGGAGGCCGCAAGAAACGCTGCATATGAAGCAATCCGATCAATTCGCACCCAAGATTGCAACTCTTTTCCACAGATTGAACTTGATGATGAAACCGAACAAAACAATGATTCTAAGCAGGAATTCAAGGTCACCAATGCTGTATCAAAGCTACCTACTGATAACAGTACATCTAATAATCAACTATTGGTAGGAACGGGTTCTCATTCAGCTGAAAATACAGAAAAGTTGAACGTTAAGAATGTTCCTACTGTTCCAGAAAAGATAAATGTGGAGAACCCATGTGAAGTTGGAGGGGCTTCAGAAAAATCAATGGTGAAGGATTCGGGTGAAGTTGAAAATGGTAAGTCAAGTATAAATGAAGCAAATCCAGGTTTAGCACCTGTAGAAAAGCCTCAACAGGATCCTATACTTGTTGAACAACATGGATTGAAAGAGGAAATGACAGATCTCATTGAAAATAAGGAACATGGATTTAAGCAGCTTGAAGGGATGCAACAAGGCAGTCAAGAGGTTGTTTTAACAGAATCGATTGTCAAGAGGATTAGAAGTGAACATGAGGATGCTGAACATACGTCTGAGAGAAAGAAAAAACTTAAAAAGAAGAGCAAGGCCAAAATGAGGAAGAGTGATGGCACAGCTTGA___TGCAGTCAAGAGAGTTCATTTTCAGTCTGCCTGGCATTGGTTTGTTCTCTTGCAAGCAAGGTCTTGGTTTGAACTACGCACTTGGGCATCTGTCACAATTTTGTTGTTGTCTTAGTTTCAACTGGCACTCTGGCAGCTGTCACAATTTTGTTTTCTTAGTTTCAACTAGGCGCTTCGGCATCTGTCACAATTTTGTTGTCCTTGTTATGCTGATGGCGTTGATGACTTTACCCAATTATGTAAATAAATTAACTGATCTGTTAGAATGTCAGGAGAAAGATGGACATTTTTGCAGATATTGATTATGTTTTTCTGCATTGCGTATACAAACACGTGTCTATATATAGGAATGCTTATTTTACTGGGTAAACTTCATTGGATTCAAAACTTCAACCGTTGGTCCCATAGAAGAGATTCTGCATCTTAATTATCCATCGTAACATAATCTCTGGATGGTTAATGTTTTCGTTTCTACATTCTACTAAGAGGTTTTCTATCACACTGAACATTGGAAAGTAGTGCATGTTGCTTTTATTTGCGCCACTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene19139___MFKNRLQEYAQKTSLPLPVYTTVNEGQDHLPEFKCSVTVSGTRYDSPPGFKYKKXXXXXXXXXXXXDLRKRGLDIHFKETRL---LKNVLSELAVKKNIPLPTYQFTQEGIAHCPNFTATVQINGESYTGAPGYSKKEAARNAAYEAIRSIRTQDCNSFPQIELDDETEQNNDSK---QEFKVTNAVSKLPTDNSTSNNQLLVGTGSHSAEN-TEKLNVKNVPT---VPEKINVENPCEVGGASEKSMVKDSGEVENGKSSINEANPGLAPVEKPQQDPILVEQHGLKEEMTDLIENKEHGFKQLEGMQQGSQEVVLTESIVKRIRSEHEDAEHTSER
A9NUQ0_______________MFKGRLQEYTQKNSFPLPVYDTVNEGQDHIPRFKCTVTVNGARYDSPPGFNHKKPAQNAAAEAAVKKLVNQGL-LPIEEVILPKKPKNVLEDIALKKNMPPPSYKFSKEGEAHCPTFTAIVEINGAFYAGDPANSKKDATNKAACKAIRAI---DPHYF-----QAESIINNGSEHPTEECDVSKSDSKIPADNWTSNNQIVGGSDSHLPANCIEKVTVENAPAVEKVSEKRNVENPCGAGEDPENSKVKNAFGAEKSIPNINHASS--VPAKHPQQDPLLARQGQLKEEIADAHPDKQHGSQEVEGKQQGSQEVDLTVSISKRSISESENAEQMSER

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
100	66	33			0.997452
101	66		33		0.997452
104		66	33		0.997452
108	66	33			0.997452
115		33	33	33	0.997753
116	33		66		0.997452
1313	12		87		0.992554
1383	14			85	0.993533
1387	85		14		0.993533
1388	85		14		0.993533
1570		16		83	0.994512
1598		23	76		1.0
1599		23	7	69	1.0
1600		76		23	1.0
1603		69	23	7	1.0
1607			69	30	1.0
1610		23		76	1.0
1612	7	23	69		1.0
1613	23	7	69		1.0
1822	34			58	1.0
2085			66	33	0.997452
2087	66		33		0.997452
2089	33		66		0.997452
2090			33	66	0.997452
2091	33			33	0.997753
2113		66		33	0.997452
2118	33	66			0.997452
2119	33			66	0.997452
2120	33			66	0.997452
2121	33	66			0.997452
2122	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain