SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19135

Length: 2252 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene19135
CGTCGTGACCTTGGCTGTTATTGGACATTTCCTCACTGGTATCTATAATATATATACACGTCGTGACCTTGGCTGTCACTCAGTGACTATATAGTTAGGGCAAGACTCTCGCTGCTGTCCGCCATTTTGTACGCGGACGCCTAAACTGCGTACCCCCATTGACAGAAAATATATTGATCCAGCAAACTCTTTCTTTCTTCGAAGGGCATTTTTACACATGTCGACCAAGTAATTCTAGGGTTCTATTCGCGTGTCCTTCGATTTTCTCTGGCAGTTGGGGTAGGGACGAGGTCAAGGCCGTAGATTTATTTCTGCCTCGATTCTTCTTTCGATGGTAGTGTTGCCCAACTGCAGACAATTCGGTCTATTTTCTTGCATTTATTGGTTGCCATTCAGATTATGGACTTAGTTATATAAAGGGGATGTTGATGATTCTATCCAGCAGTGGCATGGTTTTCTAGCAATGTGCTTCAGTCTCCTGCTGTGAGGACATACCTTTAATTTCCAACTTTCTTTCCAGTGAACGAAACTTGGGATATTCCTCAGTATTGGGGATGTTACTTGTGATTTAGGGGATTTTCACAACAAAAAATTAGCAGAGTTGCATTGTTTCTGAGTAAACAAGGGCAACAATGTTGATCAACAAGTCACTTGTACTAACCTATCTGTACCTGCTGATATACATTTCACTGTCTTCAGGTGTTATTCTCTACAATAAGTCGGACCTTCGCAAACACTCAAATTTTCCATTTCCCATAACTCTCACCATGATTCATATGGGTTTTTCTGGAGCAGTTGCATTTATTCTCGTTCGTGTTCTGAAGGTTGTAGCTCCAGTCAAGATGACATTTGAAATATATGCAACGTGTGTTGTTCCAATCAGCGCTTTCTTCGCATCAAGTCTCTGGTTTGGCAATACTGCATATCTTCATATTTCAGTGGCCTTCATTCAAATGCTCAAAGCCCTGATGCCAGTTGCAACTTTCCTGATGGCTGTTATCTGTGGTACTGATAAACTGAGATGTGATTTATTCCTCAACATGCTAGTAGTCAGTATTGGAGTTGCTGTTTCTTCATATGGAGAGATTCATTTCAACATAGTTGGAACGGTTTACCAGGTTACAGGCATATTTGCTGAAGCTCTTCGATTGGTGCTAACTCAAGTCCTCCTTCAGAAAAAGGGGTTGAGCTTAAATCCAATCACTAGTTTGTATTACATAGCTCCTTGCAGTTTCCTATTTCTTTTTGTCCCTTGGTATTTGTTGGAGCAACCAGCAATGGAGGTTCAGCAGTTGCAGTTCAATTTTTGGATTTTTTTCTCGAATGCTCTTTGTGCATTGGCACTAAACTTCTCCATTTTTCTCGTAATTGGTAGAACTGGAGCAGTCACTGTTAGAGTGGCTGGTGTTCTAAAGGATTGGATATTGATTGCTCTTTCAACAGTAGTATTCCCAGAGTCAGCAATCACAGGCCTCAACATCATTGGATATGCTATTGCTCTTTGTGGTGTGGTAATGTATAACTACTTGAAGGTGAAGGATGGACGTGCCATCAATCAATTGCCCGTTGATGCCGCTACAGAAAAGACAAAATCATCAATTAAGGATTGGAAGTTTGACAAGAAGTCATCGGATGTTTATGATGACAATGGAAACAATGGAAGTGTTCTCAATTCAGCAGCCCCTGAGGTGGATGAAGAAGCTCCATTAGTTCCTTCTTCTAGACTTTCACATATAGGTCGGACTCAAACCAGTAATCTTGGGGGTTAATTTCCTCTTCATTTAAAAATCCCAGTATTTACATTTTCCCAAACCAAATTCCCATGGCTGATATGCCTCCACTCATTTTGTTTATTCTGATCAGTGCTCACAAATGAGCATACAAAGCAGATCATATATCCATGATCCTTCCATTTTTTCATGTGATAGAGCTTTATGATTTTTTGCAGATGAGCCAGACAAGACAAACTGTATTTACTTCTGGCATTATCCTACCGGATATTATCCAGGAAGCACTTTTTATCCTGTAGTTAGCTCATTGCTTGTATCTGTGCTTATGCCAATATCGTAACATTGATATTGCCTCTTTGTATAAGCTTACATCAATCTCATGTAAGCTCTTGCAACCTTACCAATTCAATGGTTTATATAATTCATTTGGAAATAGAAAATTGGTGACTTTCTGGTAAGCTTGAGCTTTAGATATTGCTTATGCATTACTGACAAATACGGTACAGAATTATATATTTGAGC

Ace file of the UniGene sp_v1.1_unigene19135

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	phosphate translocator-related	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	phosphate translocator-related	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	organic anion transmembrane transporter activity	GO:0008514	Molecular Function	85%
Blast2go	endomembrane system	GO:0012505	Cellular Component	85%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	85%
Blast2go	integral to membrane	GO:0016021	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Domain of unknown function DUF250	IPR004853	-	0.0	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMU2

Fln msg: your sequence is longer than subject: 379 - 163

Fln protein: MLINKSLVLTYLYLLIYISLSSGVILYNKSDLRKHSNFPFPITLTMIHMGFSGAVAFILVRVLKVVAPVKMTFEIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFLMAVICGTDKLRCDLFLNMLVVSIGVAVSSYGEIHFNIVGTVYQVTGIFAEALRLVLTQVLLQKKGLSLNPITSLYYIAPCSFLFLFVPWYLLEQPAMEVQQLQFNFWIFFSNALCALALNFSIFLVIGRTGAVTVRVAGVLKDWILIALSTVVFPESAITGLNIIGYAIALCGVVMYNYLKVKDGRAINQLPVDAATEKTKSSIKDWKFDKKSSDVYDDNGNNGSVLNSAAPEVDEEAPLVPSSRLSHIGRTQTSNLGG*

Protein Length: 380

Fln nts: CGTCGTGACCTTGGCTGTTATTGGACATTTCCTCACTGGTATCTATAATATATATACACGTCGTGACCTTGGCTGTCACTCAGTGACTATATAGTTAGGGCAAGACTCTCGCTGCTGTCCGCCATTTTGTACGCGGACGCCTAAACTGCGTACCCCCATTGACAGAAAATATATTGATCCAGCAAACTCTTTCTTTCTTCGAAGGGCATTTTTACACATGTCGACCAAGTAATTCTAGGGTTCTATTCGCGTGTCCTTCGATTTTCTCTGGCAGTTGGGGTAGGGACGAGGTCAAGGCCGTAGATTTATTTCTGCCTCGATTCTTCTTTCGATGGTAGTGTTGCCCAACTGCAGACAATTCGGTCTATTTTCTTGCATTTATTGGTTGCCATTCAGATTATGGACTTAGTTATATAAAGGGGATGTTGATGATTCTATCCAGCAGTGGCATGGTTTTCTAGCAATGTGCTTCAGTCTCCTGCTGTGAGGACATACCTTTAATTTCCAACTTTCTTTCCAGTGAACGAAACTTGGGATATTCCTCAGTATTGGGGATGTTACTTGTGATTTAGGGGATTTTCACAACAAAAAATTAGCAGAGTTGCATTGTTTCTGAGTAAACAAGGGCAACA_-_ATGTTGATCAACAAGTCACTTGTACTAACCTATCTGTACCTGCTGATATACATTTCACTGTCTTCAGGTGTTATTCTCTACAATAAGTCGGACCTTCGCAAACACTCAAATTTTCCATTTCCCATAACTCTCACCATGATTCATATGGGTTTTTCTGGAGCAGTTGCATTTATTCTCGTTCGTGTTCTGAAGGTTGTAGCTCCAGTCAAGATGACATTTGAAATATATGCAACGTGTGTTGTTCCAATCAGCGCTTTCTTCGCATCAAGTCTCTGGTTTGGCAATACTGCATATCTTCATATTTCAGTGGCCTTCATTCAAATGCTCAAAGCCCTGATGCCAGTTGCAACTTTCCTGATGGCTGTTATCTGTGGTACTGATAAACTGAGATGTGATTTATTCCTCAACATGCTAGTAGTCAGTATTGGAGTTGCTGTTTCTTCATATGGAGAGATTCATTTCAACATAGTTGGAACGGTTTACCAGGTTACAGGCATATTTGCTGAAGCTCTTCGATTGGTGCTAACTCAAGTCCTCCTTCAGAAAAAGGGGTTGAGCTTAAATCCAATCACTAGTTTGTATTACATAGCTCCTTGCAGTTTCCTATTTCTTTTTGTCCCTTGGTATTTGTTGGAGCAACCAGCAATGGAGGTTCAGCAGTTGCAGTTCAATTTTTGGATTTTTTTCTCGAATGCTCTTTGTGCATTGGCACTAAACTTCTCCATTTTTCTCGTAATTGGTAGAACTGGAGCAGTCACTGTTAGAGTGGCTGGTGTTCTAAAGGATTGGATATTGATTGCTCTTTCAACAGTAGTATTCCCAGAGTCAGCAATCACAGGCCTCAACATCATTGGATATGCTATTGCTCTTTGTGGTGTGGTAATGTATAACTACTTGAAGGTGAAGGATGGACGTGCCATCAATCAATTGCCCGTTGATGCCGCTACAGAAAAGACAAAATCATCAATTAAGGATTGGAAGTTTGACAAGAAGTCATCGGATGTTTATGATGACAATGGAAACAATGGAAGTGTTCTCAATTCAGCAGCCCCTGAGGTGGATGAAGAAGCTCCATTAGTTCCTTCTTCTAGACTTTCACATATAGGTCGGACTCAAACCAGTAATCTTGGGGGTTAA___TTTCCTCTTCATTTAAAAATCCCAGTATTTACATTTTCCCAAACCAAATTCCCATGGCTGATATGCCTCCACTCATTTTGTTTATTCTGATCAGTGCTCACAAATGAGCATACAAAGCAGATCATATATCCATGATCCTTCCATTTTTTCATGTGATAGAGCTTTATGATTTTTTGCAGATGAGCCAGACAAGACAAACTGTATTTACTTCTGGCATTATCCTACCGGATATTATCCAGGAAGCACTTTTTATCCTGTAGTTAGCTCATTGCTTGTATCTGTGCTTATGCCAATATCGTAACATTGATATTGCCTCTTTGTATAAGCTTACATCAATCTCATGTAAGCTCTTGCAACCTTACCAATTCAATGGTTTATATAATTCATTTGGAAATAGAAAATTGGTGACTTTCTGGTAAGCTTGAGCTTTAGATATTGCTTATGCATTACTGACAAATACGGTACAGAATTATATATTTGAGC

Fln Alignment:

sp_v1.1_unigene19135___MEVQQLQFNFWIFFSNALCALALNFSIFLVIGRTGAVTVRVAGVLKDWILIALSTVVFPESAITGLNIIGYAIALCGVVMYNYLKVKDGRAINQLPVDAATEKTKSSIKDWKFDKKSSDVYDDNGNNGSVLNSAAPEVDEEAPLVPSSRLSHIGRTQTSNLGG
A9NMU2_______________MEVQQLQFNFWIFFSNALCALALNFSIFLVIGRTGAVTVRVAGVLKDWILIALSTVVFPESAITGLNIIGYAIALCGVVMYNYLKVKDGRAMNQLPIDAATEKSKASIKDWKLDKKSSDVYDGNGSNGSGLNSAAPDVDEEAPLIPLSRLSHIGRTQTSNLGG

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
71	50			50	1.0
73		33	66		1.0
74	33		66		1.0
75		50	50		1.0
76			16	83	0.994512
77	50		50		1.0
82	50			50	1.0
106			83	16	0.994512
1227	85		14		0.993533
1229	85	14			0.993533
1231		85		14	0.993533
1232			14	85	0.993533
1240	85			14	0.993533
1243		14		85	0.993533
1244	14			85	0.993533
1247	14			85	0.993533
1575		80	20		1.0
1698		18	81		0.999994
1701		18	81		0.999994
1707	80	20			0.999996
1708		20	80		0.999996
1709	80			20	0.999996
1710	80			20	0.999996
1714		80	20		0.999996
1717		20		80	0.999996
1719	80	20			0.999996
1720	20		80		0.999996
1780	88	11			0.923564
2170	11		88		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain