SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19134

Length: 4387 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene19134
CGTCGTGACCTTGGCTGTCACTCAATTTTGGCGGCACTTAACAGAGATTTAAGCCGTCGTGACCTTGGCTGTCACTCCTCTTCTTCGCTGCTGAGCCCTGTATTATTAAGGACGACGACTCCTCCGCTCTCCTATCGCCTCTTGTTTTGTTTTGTTTTCTCCAGCTGCGGCGGCGGCATCAATCAGCAATCAGGCCGAGCATTAATTGGGAATTGGGAGAGAGATCGATCCAATCCAATAAGCTACAATGGATCAATCCAAGGGCACCACGACAATAACTGCAGAGGTGGAGGCGCAGATAAATGCCGTGATGGGGTCGGAATCGGCGGCGTTTGAGTCCCTGATAATGCACCTCATGAGCGCTGGCAATGAACAGAGGGGCCAGGCGGAGGCGTTGTTCAACATCTGCAAGGAGAAGCACCCAGATGCTCTGGCCCTGAAGCTTGTTCATGTCCTGCAATCATGCGGGCAGGTGGAAATCCGGGCCATGGCGGCGATTCTCCTAAGGAAGCAGATCACACGGGACGAGACATACATATGGCCACGATTGGCACCGCCCACGCAGACCGCCATCAAGGCCCACCTCCTCGTCTGCGTCCAGAGGGAGGAGGCCAAGACCATCGTCAAGAAGCTCTGCGACACGGTTGCCGAGCTTGCGGCTTCCATCATGGAAGAGGGCCAGTGGCCAGAGCTCTTGCCCTTCATGTTCCAGTGCGTGAGCTCCGATTCCCCGCGTCTCAAGGAGAGCGCGTTGCTCATGTTCGCGCAGCTCTCGCAGTTCATAGGCGACCACCTCCACCCTCATCTCTCTACCCTGCACACCGTGTTCCACCAGTGTCTCTCCCCCCCCCTCTCCGTCGGACGTTCGAATCGCAGCCCTCGCGGCCACGACCAACTTCGTCCAGACGATCGAGACCCCGCAGGACCGTGAGCGATTCCAGGACCTAATCCCTGCCATGATGCAGACGCTCACGGAGGCACTCAATACGAACCAGGAGGCCACAGCCCAGGAGGCTCTCGAGATGTTTATCGAGTTGGCGGGCACCGAGCCACGGTTCCTCCGCAGGCAGATCGTTAACGTGGTGGGGAGCATGCTGCAGATCGCCGAGGCGGAGACTCTGGAAGAGGGTACTAGACATCTCGCCATAGAGTTCATTATTACCCTCGCAGAGGCTCGGGAGCGCGCCCCCGGAATGATGCGCAAGTTCCCTCAGTTCATTGGTAGGCTTTTTGCTATTCTCATGAAAATGCTTCTCGACATCGAGGATGATCCTGCCTGGCATGCTGCCAATACTGAAGACGAGGATGCCGGTGAATCAAGTAATTACAGTGTTGGTCAAGAGTGTTTGGATCGCTTGGCCATTTCTCTAGGAGGAAATACCATCGTCCCCGTTGCCTCGGAGTTGCTTCCTGCCTATTTGGCTGATCCCGATTGGCGAAAACATCATGCTGCTCTCATTACTCTTGCCCAGATCGCAGAAGGCTGTGCCAAGGTGATGCTAAAAAACCTTGAACAAGTTGTCTCTATGGTTCTGAAGTCATTCCAAGATCCACATCCTCGTGTACGATGGGCAGCCATCAATGCCATCGGGCAACTGTCAACTGATTTAGGCCCGGATTTGCAGCAACAATATCATCAACAAGTTTTGCCTGCCCTTGCTGGAGCTATGGATGATTTTCAGAATCCTCGGGTTCAGGCACATGCAGCTTCAGCAGTGCTCAACTTCAGTGAAAATTGTACGCCTGAAATTTTGACGCCGTACTTGGATGGTATAGTGAGCAAGCTACTTGTTCTTTTGCAGAATGGAAGGCAGATGGTGCAGGAGGGTGCTTTAACAGCTTTAGCATCTGTTGCCGATTCCTCACAGGAGCACTTTCAGAAGTATTATGATGCAGTTATGCCTTATCTGAAGTCCATATTAATGAATGCCACTGACAAATCTAACCGTATGCTGCGTGCCAAATCTATGGAATGCATTAGCCTGGTTGGAATGGCCGTGGGAAAAGAGAAATTCAGAAATGATGCTAAAGAGGTGATGGATGTGCTGATGACCCTGCAAGGATCTCAGATGGAGGCTGATGACCCAACCATAAGCTACATGTTACAAGCATGGGCAAGACTTTGCAAGTGTTTGGGACTAGATTTCCTTCCTTACATGAATGTTGTGATGCCTCCACTTCTTCAATCTGCCCAGTTGAAACCAGATGTGACAATCACTTCTGCAGACTCAGATAATGACATTGATGATTCAGATGATGAAAGTGTGGAGACAATTACACTCGGGGATAAAAAGATTGGTATCAAGACAAGCGTTTTGGAGGAGAAGGCTACAGCTTGCAACATGCTATGCTGCTATGCTGATGAGTTAAAGGAGGGCTTCTATCCATGGATTGATCAGGTTGCACCTACACTAGTTCCTCTTCTGAAATTTTACTTCCATGAAGAAGTTCGGAAGGCTGCCGTTTCAGCAATGCCGGAGCTTTTGCAATCTGCCAAGTTGGCTGTTGAGAAGGGAATGGCTCATGGGCGGGATCAAAACTATGTCAAGCAGTTGTCTGATTATATCATACCTGCATTGGTTGAAGCCTTGCATAAGGAACCTGAAACTGAAATATGTTCAAGCATGTTGGATGCATTGAACGAATGCATACAGATATCAGGTGTCTTGCTTGATCAAAGCCAAGTTAAGTCAATAGTGGATGAACTTAAACAAGTTATCACAGCAAGTGCAACTAGAAAGAGGGAGCGGACGGAAAGGACTACAGCAGAAGATTTTGATGCAGAGGAAGGGGAAATACTTCAAGAGGAAAATGAACAGGAAGAAGAAGTTTTTGATCAAGTTGGTGAATGCATAGGAACTCTCATTAAGACATTTAAGTCCTCTTTCTTACCATTCTTTGATGAGCTGTCATCTTACATAACACCTATGTTGGGTAAAGATAAAACGGCAGAAGAGAGACGAATTGCAATATGCATTTTTGATGATGTAGCTGAACAATGTCAAGCAGCTGCTGTAAAATATTATGACACATTTCTACCTTTCTTACTGGAGGCCTGCAATGATTCTAATGCAGATGTGCGGCAGGCTGCAGTTTATGGTATTGGTGTATGTGCCGAATTTGGTGGATCTAAATTCAAAACTCTTGTTGGTGAGGCACTTTCGAGGCTGAATTTTGTCATAAGTCAACCAAATGCACGGGAATCTGATAATGTTATGGCAACTGATAATGCAATTTCTGCATTAGGAAAAATCTGCCAATTTCATCGTGATAGCATAGATGCACCACATGTGGTTCCAGCCTGGCTAAGTTGCTTGCCTATAAAAGGTGATTTAATTGAAGCTAAAATTGTCCATGAACAGTTGTGTTCCATGGTTGAGAGGTCTGATGCAGAGCTTCTGGGTCCTAACAATCTATATCTACCTAAAATTGTTTCTGTATTTGCAGAGGTTTTATGTGCTGGCAAAGACCTTGCAACGGATCAAACTATTGCGCGGATGGTTAATCTCTTAAGACAATTGCAGCAAACGCTTTCCCCATCAGCTCTTGCTTCTACATGGTCTTCCTTGCAACCTCAGCAACAAATGGCATTGCAGTCAATTTTGTCTTCATAAATGTATTAGTGCCTTATTGAAATTATCTTTGGGCTTGTAGAGATGCATGACTTTCTACTATTGGTTCATTATTGGATTAAGGTTGTTTGACTGGACTACTTAGTTGGGTGTCTTGTTGTTCATTCTTTCATGTAGTCATTCATTTCTAGATGGTTTTCTGTAAGGCAGCTATGTATTTTTTCAATGTGAAGAGTTTTGCCCATCGATCCATGTGGCCCATGGGGTCAAATGGGTTTTCCATAGTTTTAATTATTGTATTATAGCCTGCTATTTAGCAGGGAAATGTAGATGTCTCTGATGTATGGCGATGTCAAAGTGCAGTGTGAAAGATTTTGTGGACTCATGAATCTGTATTTTTGTCATGTATCTTTAGCTGGATACAGAAAGCGGGTTGAATGCAGGAGGAAAAATGACGTTGTGAAATGGCATAAGCTTCCTTGTTTATGCCATTGTAGTGCATGGGCACTATTTATTCGTAAGAATTATTCAAATCCATTTCTGGGCCTATTTTTTTCGTAGTACTTGGATTTATTTATAAAAGCAAGGCTTGATGGCTTGTTTCTATTGTCCATTCCCCCTGAAAGTTCAATAATGTATCTTCAAATGTAAGTGGAGATATTTAATTCGCCTGGCCATTGGGTTTTAGGATATAAATACGAAATTATCGGATCATATTTTGTGAATGTAAATTAATACTATTGCTCATGGTTGGAAATATCGGATGGTTCTTTGGGTTCTTTCATTTTACATCTGTATAACAATACCTTGGATTA

Ace file of the UniGene sp_v1.1_unigene19134

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	importin beta-3, putative	-	-	0.0	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	99%

Source	InterPros	Term	Type	Identity
Blast2go	HEAT	IPR000357	-	-
Blast2go	Armadillo-like helical	IPR011989	-	-
Blast2go	Armadillo-type fold	IPR016024	-	-
Blast2go	HEAT, type 2	IPR021133	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNS1

Fln msg: your sequence is longer than subject: 886 - 132

Fln protein: MMQTLTEALNTNQEATAQEALEMFIELAGTEPRFLRRQIVNVVGSMLQIAEAETLEEGTRHLAIEFIITLAEARERAPGMMRKFPQFIGRLFAILMKMLLDIEDDPAWHAANTEDEDAGESSNYSVGQECLDRLAISLGGNTIVPVASELLPAYLADPDWRKHHAALITLAQIAEGCAKVMLKNLEQVVSMVLKSFQDPHPRVRWAAINAIGQLSTDLGPDLQQQYHQQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGRQMVQEGALTALASVADSSQEHFQKYYDAVMPYLKSILMNATDKSNRMLRAKSMECISLVGMAVGKEKFRNDAKEVMDVLMTLQGSQMEADDPTISYMLQAWARLCKCLGLDFLPYMNVVMPPLLQSAQLKPDVTITSADSDNDIDDSDDESVETITLGDKKIGIKTSVLEEKATACNMLCCYADELKEGFYPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLQSAKLAVEKGMAHGRDQNYVKQLSDYIIPALVEALHKEPETEICSSMLDALNECIQISGVLLDQSQVKSIVDELKQVITASATRKRERTERTTAEDFDAEEGEILQEENEQEEEVFDQVGECIGTLIKTFKSSFLPFFDELSSYITPMLGKDKTAEERRIAICIFDDVAEQCQAAAVKYYDTFLPFLLEACNDSNADVRQAAVYGIGVCAEFGGSKFKTLVGEALSRLNFVISQPNARESDNVMATDNAISALGKICQFHRDSIDAPHVVPAWLSCLPIKGDLIEAKIVHEQLCSMVERSDAELLGPNNLYLPKIVSVFAEVLCAGKDLATDQTIARMVNLLRQLQQTLSPSALASTWSSLQPQQQMALQSILSS*

Protein Length: 887

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTGGCGGCACTTAACAGAGATTTAAGCCGTCGTGACCTTGGCTGTCACTCCTCTTCTTCGCTGCTGAGCCCTGTATTATTAAGGACGACGACTCCTCCGCTCTCCTATCGCCTCTTGTTTTGTTTTGTTTTCTCCAGCTGCGGCGGCGGCATCAATCAGCAATCAGGCCGAGCATTAATTGGGAATTGGGAGAGAGATCGATCCAATCCAATAAGCTACAATGGATCAATCCAAGGGCACCACGACAATAACTGCAGAGGTGGAGGCGCAGATAAATGCCGTGATGGGGTCGGAATCGGCGGCGTTTGAGTCCCTGATAATGCACCTCATGAGCGCTGGCAATGAACAGAGGGGCCAGGCGGAGGCGTTGTTCAACATCTGCAAGGAGAAGCACCCAGATGCTCTGGCCCTGAAGCTTGTTCATGTCCTGCAATCATGCGGGCAGGTGGAAATCCGGGCCATGGCGGCGATTCTCCTAAGGAAGCAGATCACACGGGACGAGACATACATATGGCCACGATTGGCACCGCCCACGCAGACCGCCATCAAGGCCCACCTCCTCGTCTGCGTCCAGAGGGAGGAGGCCAAGACCATCGTCAAGAAGCTCTGCGACACGGTTGCCGAGCTTGCGGCTTCCATCATGGAAGAGGGCCAGTGGCCAGAGCTCTTGCCCTTCATGTTCCAGTGCGTGAGCTCCGATTCCCCGCGTCTCAAGGAGAGCGCGTTGCTCATGTTCGCGCAGCTCTCGCAGTTCATAGGCGACCACCTCCACCCTCATCTCTCTACCCTGCACACCGTGTTCCACCAGTGTCTCTCCCCCCCCCTCTCCGTCGGACGTTCGAATCGCAGCCCTCGCGGCCACGACCAACTTCGTCCAGACGATCGAGACCCCGCAGGACCGTGAGCGATTCCAGGACCTAATCCCTGCC_-_ATGATGCAGACGCTCACGGAGGCACTCAATACGAACCAGGAGGCCACAGCCCAGGAGGCTCTCGAGATGTTTATCGAGTTGGCGGGCACCGAGCCACGGTTCCTCCGCAGGCAGATCGTTAACGTGGTGGGGAGCATGCTGCAGATCGCCGAGGCGGAGACTCTGGAAGAGGGTACTAGACATCTCGCCATAGAGTTCATTATTACCCTCGCAGAGGCTCGGGAGCGCGCCCCCGGAATGATGCGCAAGTTCCCTCAGTTCATTGGTAGGCTTTTTGCTATTCTCATGAAAATGCTTCTCGACATCGAGGATGATCCTGCCTGGCATGCTGCCAATACTGAAGACGAGGATGCCGGTGAATCAAGTAATTACAGTGTTGGTCAAGAGTGTTTGGATCGCTTGGCCATTTCTCTAGGAGGAAATACCATCGTCCCCGTTGCCTCGGAGTTGCTTCCTGCCTATTTGGCTGATCCCGATTGGCGAAAACATCATGCTGCTCTCATTACTCTTGCCCAGATCGCAGAAGGCTGTGCCAAGGTGATGCTAAAAAACCTTGAACAAGTTGTCTCTATGGTTCTGAAGTCATTCCAAGATCCACATCCTCGTGTACGATGGGCAGCCATCAATGCCATCGGGCAACTGTCAACTGATTTAGGCCCGGATTTGCAGCAACAATATCATCAACAAGTTTTGCCTGCCCTTGCTGGAGCTATGGATGATTTTCAGAATCCTCGGGTTCAGGCACATGCAGCTTCAGCAGTGCTCAACTTCAGTGAAAATTGTACGCCTGAAATTTTGACGCCGTACTTGGATGGTATAGTGAGCAAGCTACTTGTTCTTTTGCAGAATGGAAGGCAGATGGTGCAGGAGGGTGCTTTAACAGCTTTAGCATCTGTTGCCGATTCCTCACAGGAGCACTTTCAGAAGTATTATGATGCAGTTATGCCTTATCTGAAGTCCATATTAATGAATGCCACTGACAAATCTAACCGTATGCTGCGTGCCAAATCTATGGAATGCATTAGCCTGGTTGGAATGGCCGTGGGAAAAGAGAAATTCAGAAATGATGCTAAAGAGGTGATGGATGTGCTGATGACCCTGCAAGGATCTCAGATGGAGGCTGATGACCCAACCATAAGCTACATGTTACAAGCATGGGCAAGACTTTGCAAGTGTTTGGGACTAGATTTCCTTCCTTACATGAATGTTGTGATGCCTCCACTTCTTCAATCTGCCCAGTTGAAACCAGATGTGACAATCACTTCTGCAGACTCAGATAATGACATTGATGATTCAGATGATGAAAGTGTGGAGACAATTACACTCGGGGATAAAAAGATTGGTATCAAGACAAGCGTTTTGGAGGAGAAGGCTACAGCTTGCAACATGCTATGCTGCTATGCTGATGAGTTAAAGGAGGGCTTCTATCCATGGATTGATCAGGTTGCACCTACACTAGTTCCTCTTCTGAAATTTTACTTCCATGAAGAAGTTCGGAAGGCTGCCGTTTCAGCAATGCCGGAGCTTTTGCAATCTGCCAAGTTGGCTGTTGAGAAGGGAATGGCTCATGGGCGGGATCAAAACTATGTCAAGCAGTTGTCTGATTATATCATACCTGCATTGGTTGAAGCCTTGCATAAGGAACCTGAAACTGAAATATGTTCAAGCATGTTGGATGCATTGAACGAATGCATACAGATATCAGGTGTCTTGCTTGATCAAAGCCAAGTTAAGTCAATAGTGGATGAACTTAAACAAGTTATCACAGCAAGTGCAACTAGAAAGAGGGAGCGGACGGAAAGGACTACAGCAGAAGATTTTGATGCAGAGGAAGGGGAAATACTTCAAGAGGAAAATGAACAGGAAGAAGAAGTTTTTGATCAAGTTGGTGAATGCATAGGAACTCTCATTAAGACATTTAAGTCCTCTTTCTTACCATTCTTTGATGAGCTGTCATCTTACATAACACCTATGTTGGGTAAAGATAAAACGGCAGAAGAGAGACGAATTGCAATATGCATTTTTGATGATGTAGCTGAACAATGTCAAGCAGCTGCTGTAAAATATTATGACACATTTCTACCTTTCTTACTGGAGGCCTGCAATGATTCTAATGCAGATGTGCGGCAGGCTGCAGTTTATGGTATTGGTGTATGTGCCGAATTTGGTGGATCTAAATTCAAAACTCTTGTTGGTGAGGCACTTTCGAGGCTGAATTTTGTCATAAGTCAACCAAATGCACGGGAATCTGATAATGTTATGGCAACTGATAATGCAATTTCTGCATTAGGAAAAATCTGCCAATTTCATCGTGATAGCATAGATGCACCACATGTGGTTCCAGCCTGGCTAAGTTGCTTGCCTATAAAAGGTGATTTAATTGAAGCTAAAATTGTCCATGAACAGTTGTGTTCCATGGTTGAGAGGTCTGATGCAGAGCTTCTGGGTCCTAACAATCTATATCTACCTAAAATTGTTTCTGTATTTGCAGAGGTTTTATGTGCTGGCAAAGACCTTGCAACGGATCAAACTATTGCGCGGATGGTTAATCTCTTAAGACAATTGCAGCAAACGCTTTCCCCATCAGCTCTTGCTTCTACATGGTCTTCCTTGCAACCTCAGCAACAAATGGCATTGCAGTCAATTTTGTCTTCATAA___ATGTATTAGTGCCTTATTGAAATTATCTTTGGGCTTGTAGAGATGCATGACTTTCTACTATTGGTTCATTATTGGATTAAGGTTGTTTGACTGGACTACTTAGTTGGGTGTCTTGTTGTTCATTCTTTCATGTAGTCATTCATTTCTAGATGGTTTTCTGTAAGGCAGCTATGTATTTTTTCAATGTGAAGAGTTTTGCCCATCGATCCATGTGGCCCATGGGGTCAAATGGGTTTTCCATAGTTTTAATTATTGTATTATAGCCTGCTATTTAGCAGGGAAATGTAGATGTCTCTGATGTATGGCGATGTCAAAGTGCAGTGTGAAAGATTTTGTGGACTCATGAATCTGTATTTTTGTCATGTATCTTTAGCTGGATACAGAAAGCGGGTTGAATGCAGGAGGAAAAATGACGTTGTGAAATGGCATAAGCTTCCTTGTTTATGCCATTGTAGTGCATGGGCACTATTTATTCGTAAGAATTATTCAAATCCATTTCTGGGCCTATTTTTTTCGTAGTACTTGGATTTATTTATAAAAGCAAGGCTTGATGGCTTGTTTCTATTGTCCATTCCCCCTGAAAGTTCAATAATGTATCTTCAAATGTAAGTGGAGATATTTAATTCGCCTGGCCATTGGGTTTTAGGATATAAATACGAAATTATCGGATCATATTTTGTGAATGTAAATTAATACTATTGCTCATGGTTGGAAATATCGGATGGTTCTTTGGGTTCTTTCATTTTACATCTGTATAACAATACCTTGGATTA

Fln Alignment:

sp_v1.1_unigene19134___MATDNAISALGKICQFHRDSIDAPHVVPAWLSCLPIKGDLIEAKIVHEQLCSMVERSDAELLGPNNLYLPKIVSVFAEVLCAGKDLATDQTIARMVNLLRQLQQTLSPSALASTWSSLQPQQQMALQSILSS
B8LNS1_______________MATDNAISALGKICQFHRDSIDAPHVVPAWLSCLPIKGDLIEAKIVHEQLCSMVERSDAELLGPNNLYLPKIVSVFAEVLCAGKDLATEQTIARMVNLLRQLQQTLSPSALASTWSSLQPQQQMALQSILSS

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
75	33	66			1.0
76	33		33		1.0
77	33			66	1.0
79	33	33			1.0
80		66	33		1.0
82		66	33		1.0
83	33			66	1.0
84		33		66	1.0
88		71	28		1.0
95		28	71		1.0
99		71		28	1.0
101	28			71	1.0
117	87			12	0.992554
120	87			12	0.992554
121		87	12		0.992554
122	12			87	0.992554
126		87		12	0.992554
127		87	12		0.992554
131		87	12		0.992554
312		12	87		0.992554
313	87		12		0.992554
316	12		87		0.992554
317		12	87		0.992554
318		12	87		0.992554
320		87		12	0.992554
323	87			12	0.992554
324	87		12		0.992554
327		12	87		0.992554
328			87	12	0.992554
330	12		87		0.992554
333			87	12	0.992554
1334		14		85	0.993533
1397			20	80	0.995493
1424	10		90		0.90298
1627	85		14		0.993533
1658		88		11	0.923564
3081	16		83		0.995451
3199		90	10		0.991528
3200	90		10		0.991528
3222	10		90		0.991528
3603	87		12		0.999964
3660	87			12	1.0
3663		91	8		0.999766
3664	87	8		4	0.999414
3667	91			8	0.999766
3669	8			91	0.999766
3670		8		91	0.999766
3673	8			91	0.999766
3806	92		7		0.999664
3967			6	93	0.999998
4113	10			90	0.999898
4178		12		87	0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
142	158	TTGTT TTGTT TTGTT TT	17

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain