SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19118

Length: 1456 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19118

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger (C3HC4-type RING finger) family protein; K11982 E3 ubiquitin-protein ligase RNF115/126 [EC:6.3.2.19]	-	-	7.0e-25	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	thioredoxin-related protein	-	-	0.0	64%

Source	ECs	Term	Type	e value	Identity
AutoFact	Ubiquitin--protein ligase.	EC:6.3.2.19	-	7.0e-25	47%

Source	GOs	Term	Type	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	64%
Blast2go	protein binding	GO:0005515	Molecular Function	64%
Blast2go	mitochondrion	GO:0005739	Cellular Component	64%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	64%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	64%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSK8

Fln msg:

Fln protein: MSSARRWWCHQCNMAIRQPRSTSRPVCPHCHGGFVEKSRRNHGAEEEDEAMAEVMQSLARFASRRPFSPFFFPPHGHVHDDEFLPVALRRMTRGNMGEFLLGPGLEQLLQELVESSPGRRGPPPASRASVDALEEVKVSGKDAAAQCAVCKDEFELGKYAKRMPCSHMYHADCILPWLAQHNSCPVCRYEMPTDNPEYDRMHSRGRNETPSSGRRSRFSHIWPFRASMTTSQQAQAETSSGPASSGETVSSFFHDTQGNSSGSLDDDGDVIMQDTMGQL*

Protein Length: 281

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTGTTTTGGCCGGGGGCTTTTCAGCGATGTCGTCTGCCACTGGAGAATTGAGGTTCCAGGGGTTTCGCTAAATAGACAACGGGCTTTTAGCGAGGGTTTTTATTTGTTTTGCCCGGGAGCTTTTCAGCG_-_ATGTCGTCTGCCAGGAGGTGGTGGTGCCATCAGTGCAACATGGCAATCAGGCAGCCCCGCAGCACAAGCAGGCCGGTCTGCCCTCACTGCCACGGTGGCTTTGTGGAGAAGTCGAGACGTAATCATGGCGCGGAAGAGGAAGACGAAGCCATGGCCGAGGTGATGCAATCCCTTGCCAGGTTTGCTTCGCGCCGGCCTTTCAGCCCTTTCTTCTTCCCTCCCCACGGCCATGTGCACGATGATGAATTCCTCCCCGTGGCGCTGAGGAGAATGACCAGAGGGAATATGGGGGAGTTTTTACTCGGCCCCGGGCTAGAGCAGTTGTTGCAGGAATTGGTGGAGAGCAGCCCCGGCAGAAGGGGCCCGCCACCGGCGTCGAGGGCATCGGTGGACGCTCTGGAGGAGGTGAAGGTCAGCGGCAAGGATGCGGCGGCGCAGTGCGCGGTGTGTAAGGATGAGTTCGAACTAGGGAAATATGCAAAGCGGATGCCCTGTAGTCATATGTATCACGCCGATTGCATTCTTCCATGGCTTGCGCAGCATAATTCTTGCCCGGTATGTCGATATGAGATGCCGACAGACAATCCGGAATATGATCGGATGCACTCCCGTGGTCGAAATGAAACGCCTTCTTCAGGTAGAAGGTCACGCTTTTCTCATATCTGGCCCTTCAGAGCATCCATGACAACATCCCAGCAAGCTCAAGCTGAAACAAGCTCAGGTCCAGCCAGTAGTGGAGAGACTGTGTCTAGCTTCTTCCACGACACTCAGGGAAACAGTTCTGGGAGTTTAGATGATGATGGGGATGTAATTATGCAAGACACAATGGGGCAACTGTGA___GGTGATCTATTGTCATATTATACTGTGCAGCAAATTTTCAAAGTCGCAGAAGGTAAGGTTGCTAAGCATATTTACACCAGTCTGGTAAAGGAAGCGGCAACTAGTTTGATATGTTCTTGCCCTCTTGACAGTCATTTTGACAGGTGTTCAGTGTTCTTTAGGCATTAACAATAAGGGTAGTGTATAACTGATGTGAATAGTGTGCAAAGAAAAATCTAGTACTATATGGTTGAGTGGAGTCTCTAAATTTGTAATATATGCAAAACAATTTCTATCACTTTTGTCTTTGGGAATTAGTTGTGACAAACTGGTATTCTTGTACATGAGGCATAAATCAACACTCCATTGCTTGACTGACTAAAATAATGTGTACAACATGATCTACCTGTTTGAGTCATGTCAATTGAGTTCTGTCACTATCTGAGTTGGGAATAAACTTGAACCATATACAGGAAGGTGCA

Fln Alignment:

sp_v1.1_unigene19118___MSSARRWWCHQCNMAIRQPRSTSRPVCPHCHGGFVEKSRR-NHGXXXXXXXXXXVMQSLXXXXXXXXXXXXXXXXHGHVHDDEFLPVALRRMTRGNMGEFXXXXXXXXXXXXXVEXXXXXXXXXXXXXXXVDALEEVKVSGKDAAAQCAVCKDEFELGKYAKRMPCSHMYHADCILPWLAQHNSCPVCRYEMPTDNPEYDRMHSRGRNETPSSGRRSRFSHIWPFRASMTTSQQAQAETSSGPASSGETVSSFFHDTQ--XXXXXXXXXXXXVIMQDTMGQL
C0PSK8_______________MSSARSWWCHQCNAAIRQPRSANRPVCSHCHEGFVEEIENGNYGAEEEDEAMAQVMQSLSRFASRRPFSPFFFPPHGHVHDDEFLPVALRRMMQGNMGDCLLGPGLEQLLQELAESDPGRRGPPPASRASVDALENVKVSGKDAAAQCAVCKDEFEPGKYAKRMPCNHMYHADCILPWLAQHNSCPVCRYEMPTDDPEYDRMHVRGRSDTSSSGRRSRFSHIWPFRASMTTSQQAQAETSSGPANSGETVSSLFHESQGNSSGSPRIDDDGNIIMRNTRGQL

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
651		12	87		0.992554
652	87		12		0.992554
655	12	87			0.992554
660		12		87	0.992554
661	87			12	0.992554
667	87	12			0.992554
670		12		87	0.992554
782	40		60		1.0
842		66		33	0.997452
927		85		14	0.993533
1061	80		20		0.995493
1375		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain