SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19104

Length: 235 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

UniGene Fasta

>sp_v1.1_unigene19104
GTAAAGTGGTAGTGCTGATGGAATTGAAGATGTGGCAATTAAGATCTCAGATGAAGGTGGTGGAATACCAAGAAGTGGGCTACCCAATATATTTACATATCTATACAGTACTGCAGAAAGCCCGGTATCTGAAGAAGTAAGTATGGCTGGATATGGGTATGGGCTTCCAATTAGTCGTCTTTATGCAAGATACTTTGGCGGTGATTTGCAAGTCATATCAATGGAGGGATATGGT

Ace file of the UniGene sp_v1.1_unigene19104

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pyruvate dehydrogenase, putative (EC:2.7.11.2); K00898 pyruvate dehydrogenase kinase [EC:2.7.11.2]	-	-	4.0e-29	78%
FL-Next	tr=cDNA clone:J023007C01, full insert sequence; Oryza sativa subsp. japonica (Rice).	-	-	0.0	81%
Blast2go	pyruvate dehydrogenase kinase	-	-	3.81665e-29	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	[Pyruvate dehydrogenase (acetyl-transferring)] kinase.	EC:2.7.11.2	-	3.81665e-29	84%

Source	ECs	Term	Type	e value	Identity
AutoFact	[Pyruvate dehydrogenase (acetyl-transferring)] kinase.	EC:2.7.11.2	-	4.0e-29	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	peptidyl-histidine phosphorylation	GO:0018106	Biological Process	3.81665e-29	84%
Blast2go	signal transduction	GO:0007165	Biological Process	3.81665e-29	84%
Blast2go	histidine phosphotransfer kinase activity	GO:0009927	Molecular Function	3.81665e-29	84%
Blast2go	two-component sensor activity	GO:0000155	Molecular Function	3.81665e-29	84%
Blast2go	ATP binding	GO:0005524	Molecular Function	3.81665e-29	84%
Blast2go	pyruvate dehydrogenase (acetyl-transferring) kinase activity	GO:0004740	Molecular Function	3.81665e-29	84%
Blast2go	mitochondrion	GO:0005739	Cellular Component	3.81665e-29	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ATPase-like, ATP-binding domain	IPR003594	-	3.81665e-29	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B7EFZ2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 18 aas, your sequence is shorter than subject: 78 - 255

Fln protein: *SGSADGIEDVAIKISDEGGGIPRSGLPNIFTYLYSTAESPVSEEVSMAGYGYGLPISRLYARYFGGDLQVISMEGYG

Protein Length: 79

Fln nts: GTAAAGTGGTAGTGCTGATGGAATTGAAGATGTGGCAATTAAGATCTCAGATGAAGGTGGTGGAATACCAAGAAGTGGGCTACCCAATATATTTACATATCTATACAGTACTGCAGAAAGCCCGGTATCTGAAGAAGTAAGTATGGCTGGATATGGGTATGGGCTTCCAATTAGTCGTCTTTATGCAAGATACTTTGGCGGTGATTTGCAAGTCATATCAATGGAGGGATATGGT

Fln Alignment:

sp_v1.1_unigene19104___ADGIEDVAIKISDEGGGIPRSGLPNIFTYLYSTAESPV-----SEEVSMAGYGYGLPISRLYARYFGGDLQVISMEGYG
B7EFZ2_______________ADGAEDVTIKVSDEGGGIPRSGLPRIFTYLYSTAKNPPDMDCPSEGVTMAGYGYGLPISRLYARYFGGDLQIISMEGYG

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
111	16		83		0.994512
154	40	60			1.0
198	11			88	0.991528

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain