SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19088

Length: 2363 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene19088
CGTCGTGACCTTGGCTGTCACTCATCCTCTGGTTCACCATTGACGCCATGAAAGCCTAGGTTTTGACGGAGCATCGGGTTTATGCTTCTTCGGTTCCTGGATCAGAAATCTTTTAGCGTAACCTTTCAACTGGGGAAAGATTCGGGGCGGGAACGGATGATCCTTATGACTAGGCCGGCTGTCGAACGGAATCTGTAATGTAATATAAGGTTTTCATTGATTAGGGCTTTATGTGGAATTAAGGATGACTTTGTCCCACTGCGGGACCGGTCCATTGAATGCCTGGTAAGGAAAAAGATATTTCGACATTGTAGCGATTTAACCGCGAATCGATCGCGGAGCCTAACGTGATTAGCGTAAGCTTACATTTTCATGGTTCGTACATTATTTCGGGGATGTACGAAGTTCTATAGGTTAAATGATCGCGCTTAGCGCATCACAGGCGTAATATCTAGCTGCCAAGGAAAAACTTTTGCAGATAAGAGTCAGGGAAAACGTTATCTCGTGGACCTCGTCATTGAAGTTATGGCCGATAAATTTTAGCAGTGAGTAATAAATGATATTATTGACTCTCATCTGGTTTAAGACGGATTTCTCATGGCCTCTGTAAACCGATATTTAAAGGCAATGCACTGTTCGATTAAGATCGTACAGGACAAATGTTGTTGTGCGGAATGGGAGAACGCAATAGGATAAGACTGGGAGATGAAATTCGGCATTTGAATTCGCTGCCTTTGCGAGATTTGATGAAAGAACATGATGAAGGCGAGATCGGAGAAATTACAGCGGAGGATGAGGGGATTTCTCAGCGGCAAAGGCAGACCATGGGGTCAATTCTGCGCAACCGGTTAGGCAGTTTCCGGACTAGTGACGCCAGTAAAACCCTATGGGAAGTCATACAGTCGGAGGAGCAGTCAAAGCCGTGGGAAGAAGAACCTAAAGAAGCCGGCGGCGGCCGTATTTTAAAAGCTGTTCTCCGGTTAGTCGCGTGCAACAAGGACGAACAAAGTCACGAGGAAGAAGAATCATTTCGTCTCTTGGAAGGTTGGGGAGCCAATAGATCGCCGGCTGTGGTTGATTCGGCTCGCCTCCAGGCCTCTACCGACGAAAGGCTTTCGAATTACGAAGGCGCCGTTCGGGTTTTCCTGGTCGGTGGTGGTTCGAGTCCTACGCAGGGGCAAACCATGGACGGAATGAATCGACGCCGATGGAGCTCTCTGAGGGAGAAGCTGAGGTTGCGCAACATCGCCTGCTGCGGAAGCCGGTGGAGGTTAGCGGAGGCTTCGAACCTGAACTCTACGCAGGTCGTCCTTCCGGCGAGAGAAGAAGACGAAACAAGTTGGAGCATGGAGGGATCTTCCGATCCAGCAGGTCCCGGTATCGATCCCACCCCACAACAAAATGCTGCAGCGACGACTTCAGAAAACATCGACAATGATACTGAAGAAAGCTGCGTCAACTCCGAGCAACCGGAAACCCCACGGGAAAACACAAGAACAGACGGCGAAAATACAAGAACGGAGCGGCGACAGCTCATGACGTTCTTCGAGGACAGGCCGAATATGCGGGTTGGAATGAACCTGGCGGCAGCATTGGCGGCTGAAAGGCAGCTGCGCGCTACGCAGGAGTGGGAGAGCCTTGGCTCCGGCAGAGCCGCCTCTGCCGTCGCTGTTCCAGAAGCTTCAAATCCGTCCGCTGGTGAACAGGTTGAGTCTAGGAGGTCGGCGTTTCGAGTCTCGCTGATGTCTCTTTTGGAAGAGGGCGACAACCGGCAGGGGACGGCCTCCTCTTCTTTGTTCCCGGAAAGATGGGATTCCAAGGAGGAGGACGGCAACCACAGCCAGAACCACGATGGAGGGCTGGATCCGTTGTGCTGTGTGTGCATGGTGAGGCGGAAGGGAGCGGCCTTCATCCCATGCGGCCACACATTCTGCAGATTGTGCACCCGTGAGCTTTGGGTAGGCCGGGGATCCTGCCCACTCTGCAACAGATACATCATCGAGATTCTTGATATTTTCTGATGAAAGAATAATTTATTTTGGTTTATTTTCATTTTCTACCAATAATACTCATTCTCAGCAATTACTGGCGTCCATTATATTCCAGGGCGGAGCATCATCAGAATTGGAGTCGATTTTTCTTCCGTCTGTTCTTCGATTGTAATATGTTCTGTGCAAAAATCTATTGTGTTCGTTTAATTTTGTTAGTTTCCGTTCTTCCTTTACCACCGGATTACAGCTGACGGATAAATTGCAGGCAATGGCTGGCGACGCGTTATGCGTCTGTCAGACCACGTGCTGACTCAGCCAAACGCGAAATAAAGATCTCTGTAGGCTTTTGTCATCGTTTTTAGCGTGAAGAGA

Ace file of the UniGene sp_v1.1_unigene19088 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger (C3HC4-type RING finger) family protein	-	-	2.0e-23	28%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	35%
Blast2go	zinc finger (c3hc4-type ring finger) family protein	-	-	1.09206e-31	52%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	1.09206e-31	52%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	1.09206e-31	52%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	1.09206e-31	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6I6Z1

Fln msg: your sequence is longer than subject: 454 - 326

Fln protein: MLLCGMGERNRIRLGDEIRHLNSLPLRDLMKEHDEGEIGEITAEDEGISQRQRQTMGSILRNRLGSFRTSDASKTLWEVIQSEEQSKPWEEEPKEAGGGRILKAVLRLVACNKDEQSHEEEESFRLLEGWGANRSPAVVDSARLQASTDERLSNYEGAVRVFLVGGGSSPTQGQTMDGMNRRRWSSLREKLRLRNIACCGSRWRLAEASNLNSTQVVLPAREEDETSWSMEGSSDPAGPGIDPTPQQNAAATTSENIDNDTEESCVNSEQPETPRENTRTDGENTRTERRQLMTFFEDRPNMRVGMNLAAALAAERQLRATQEWESLGSGRAASAVAVPEASNPSAGEQVESRRSAFRVSLMSLLEEGDNRQGTASSSLFPERWDSKEEDGNHSQNHDGGLDPLCCVCMVRRKGAAFIPCGHTFCRLCTRELWVGRGSCPLCNRYIIEILDIF*

Protein Length: 455

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCCTCTGGTTCACCATTGACGCCATGAAAGCCTAGGTTTTGACGGAGCATCGGGTTTATGCTTCTTCGGTTCCTGGATCAGAAATCTTTTAGCGTAACCTTTCAACTGGGGAAAGATTCGGGGCGGGAACGGATGATCCTTATGACTAGGCCGGCTGTCGAACGGAATCTGTAATGTAATATAAGGTTTTCATTGATTAGGGCTTTATGTGGAATTAAGGATGACTTTGTCCCACTGCGGGACCGGTCCATTGAATGCCTGGTAAGGAAAAAGATATTTCGACATTGTAGCGATTTAACCGCGAATCGATCGCGGAGCCTAACGTGATTAGCGTAAGCTTACATTTTCATGGTTCGTACATTATTTCGGGGATGTACGAAGTTCTATAGGTTAAATGATCGCGCTTAGCGCATCACAGGCGTAATATCTAGCTGCCAAGGAAAAACTTTTGCAGATAAGAGTCAGGGAAAACGTTATCTCGTGGACCTCGTCATTGAAGTTATGGCCGATAAATTTTAGCAGTGAGTAATAAATGATATTATTGACTCTCATCTGGTTTAAGACGGATTTCTCATGGCCTCTGTAAACCGATATTTAAAGGCAATGCACTGTTCGATTAAGATCGTACAGGACAA_-_ATGTTGTTGTGCGGAATGGGAGAACGCAATAGGATAAGACTGGGAGATGAAATTCGGCATTTGAATTCGCTGCCTTTGCGAGATTTGATGAAAGAACATGATGAAGGCGAGATCGGAGAAATTACAGCGGAGGATGAGGGGATTTCTCAGCGGCAAAGGCAGACCATGGGGTCAATTCTGCGCAACCGGTTAGGCAGTTTCCGGACTAGTGACGCCAGTAAAACCCTATGGGAAGTCATACAGTCGGAGGAGCAGTCAAAGCCGTGGGAAGAAGAACCTAAAGAAGCCGGCGGCGGCCGTATTTTAAAAGCTGTTCTCCGGTTAGTCGCGTGCAACAAGGACGAACAAAGTCACGAGGAAGAAGAATCATTTCGTCTCTTGGAAGGTTGGGGAGCCAATAGATCGCCGGCTGTGGTTGATTCGGCTCGCCTCCAGGCCTCTACCGACGAAAGGCTTTCGAATTACGAAGGCGCCGTTCGGGTTTTCCTGGTCGGTGGTGGTTCGAGTCCTACGCAGGGGCAAACCATGGACGGAATGAATCGACGCCGATGGAGCTCTCTGAGGGAGAAGCTGAGGTTGCGCAACATCGCCTGCTGCGGAAGCCGGTGGAGGTTAGCGGAGGCTTCGAACCTGAACTCTACGCAGGTCGTCCTTCCGGCGAGAGAAGAAGACGAAACAAGTTGGAGCATGGAGGGATCTTCCGATCCAGCAGGTCCCGGTATCGATCCCACCCCACAACAAAATGCTGCAGCGACGACTTCAGAAAACATCGACAATGATACTGAAGAAAGCTGCGTCAACTCCGAGCAACCGGAAACCCCACGGGAAAACACAAGAACAGACGGCGAAAATACAAGAACGGAGCGGCGACAGCTCATGACGTTCTTCGAGGACAGGCCGAATATGCGGGTTGGAATGAACCTGGCGGCAGCATTGGCGGCTGAAAGGCAGCTGCGCGCTACGCAGGAGTGGGAGAGCCTTGGCTCCGGCAGAGCCGCCTCTGCCGTCGCTGTTCCAGAAGCTTCAAATCCGTCCGCTGGTGAACAGGTTGAGTCTAGGAGGTCGGCGTTTCGAGTCTCGCTGATGTCTCTTTTGGAAGAGGGCGACAACCGGCAGGGGACGGCCTCCTCTTCTTTGTTCCCGGAAAGATGGGATTCCAAGGAGGAGGACGGCAACCACAGCCAGAACCACGATGGAGGGCTGGATCCGTTGTGCTGTGTGTGCATGGTGAGGCGGAAGGGAGCGGCCTTCATCCCATGCGGCCACACATTCTGCAGATTGTGCACCCGTGAGCTTTGGGTAGGCCGGGGATCCTGCCCACTCTGCAACAGATACATCATCGAGATTCTTGATATTTTCTGA___TGAAAGAATAATTTATTTTGGTTTATTTTCATTTTCTACCAATAATACTCATTCTCAGCAATTACTGGCGTCCATTATATTCCAGGGCGGAGCATCATCAGAATTGGAGTCGATTTTTCTTCCGTCTGTTCTTCGATTGTAATATGTTCTGTGCAAAAATCTATTGTGTTCGTTTAATTTTGTTAGTTTCCGTTCTTCCTTTACCACCGGATTACAGCTGACGGATAAATTGCAGGCAATGGCTGGCGACGCGTTATGCGTCTGTCAGACCACGTGCTGACTCAGCCAAACGCGAAATAAAGATCTCTGTAGGCTTTTGTCATCGTTTTTAGCGTGAAGAGA

Fln Alignment:

sp_v1.1_unigene19088___GSSPTQGQTMDGMNRRRWSSLREKLRLRNIACCGSRWRLAEASNLNSTQVVLPAREEDETSWSMEGSSDPAGPGIDPTPQQNAAATTSENIDNDTEESCVNSEQPETPRENTRTDGENT--RTERRQLMTFFEDRPNMRVGMNXXXXXXAERQLRATQEWESLGSGRAASAVAVPEASNPSAGEQVESRRSAFRVSLMSLLEEGDNRQGTASSSLFPERWDSKEEDGNHSQNHDGGLDPLCCVCMVRRKGAAFIPCGHTFCRLCTRELWVGRGSCPLCNRYIIEILDIF
F6I6Z1_______________GYKDVLGQPNNNNNKMSWKSFKDRLRIRR---AGAAWTSSMPIPASDVPTRSQLSRRQSTRVTMYTTDPP-----EPTETFEESPGTPEN-PLPVEAVQVHNLRPQFSRNNSIRAPSRTFSRADSTRLHTGVTDGPV--VSRRLSAALAEERELQRAESAAALGGDDDEAG----EEEDEGEGEE-EGPEAAPRMSLMALLEETDRQAGIVGPAYVLE--EEEDEDEEEEAGSGGGIEYNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFILEILDIF

SNPs (tot: 58)

Position	A %	C %	G %	T %	Probability
212			90	10	0.90298
231		90		10	0.90298
234		90	10		0.90298
236		90	10		0.90298
237	10	90			0.90298
238	90	10			0.90298
239	90		10		0.90298
240			10	90	0.90298
241		10		90	0.90298
243	10			90	0.90298
246			10	90	0.90298
248	90			10	0.90298
249		10		90	0.90298
250	10		90		0.90298
252			10	90	0.90298
253	10	90			0.90298
275		88	11		0.923564
329	87			12	0.992554
330	87		12		0.992554
332			12	87	0.992554
335		12		87	0.992554
336	10			90	0.90298
379			80	20	0.999996
380		80	20		0.999996
383	80			20	0.999996
448			16	83	0.994512
497			83	16	0.994512
501		83	16		0.994512
507	16	83			0.994512
508	16			83	0.994512
509		83	16		0.994512
515	16			83	0.994512
516		16	83		0.994512
524		80		20	0.995493
1192		83		16	0.994512
1223	83		16		0.994512
1288	80		20		0.995493
2261			20	80	0.995493
2262	20			80	0.995493
2263		80	20		0.995493
2267		20	20	60	0.99255
2270		80		20	0.995493
2271		80	20		0.995493
2273	20	20	60		0.99255
2275	80		20		0.995493
2276	60		20	20	0.99255
2280	20		80		0.995493
2282	60	20	20		0.99255
2284	75			25	0.996473
2285	75	25			0.996473
2286	25		75		0.996473
2287		75		25	0.996473
2293	66		33		0.997452
2297		66	33		0.997452
2300	33		66		0.997452
2302			33	66	0.997452
2310	33			66	0.997452
2312	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain