SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19079

Length: 1415 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19079

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquinol-cytochrome c reductase iron-sulfur subunit (Fragment) n=2 Tax=Vitis vinifera RepID=D7TFJ1_VITVI	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	rieske iron-sulfur protein	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquinol--cytochrome-c reductase.	EC:1.10.2.2	-	0.0	89%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Oxidative phosphorylation	00190		0.0	89%
Blast2go	Metabolic pathways	01100		0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	89%
Blast2go	electron transport chain	GO:0022900	Biological Process	89%
Blast2go	metal ion binding	GO:0046872	Molecular Function	89%
Blast2go	ubiquinol-cytochrome-c reductase activity	GO:0008121	Molecular Function	89%
Blast2go	2 iron, 2 sulfur cluster binding	GO:0051537	Molecular Function	89%
Blast2go	mitochondrial respiratory chain complex III	GO:0005750	Cellular Component	89%
Blast2go	integral to membrane	GO:0016021	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquinol cytochrome reductase, transmembrane domain	IPR004192	-	89%
Blast2go	Rieske iron-sulphur protein, C-terminal	IPR005805	-	89%
Blast2go	Ubiquinol-cytochrome c reductase, iron-sulphur subunit	IPR006317	-	89%
Blast2go	Rieske iron-sulphur protein	IPR014349	-	89%
Blast2go	Rieske [2Fe-2S] iron-sulphur domain	IPR017941	-	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMH0

Fln msg: your sequence is longer than subject: 276 - 245

Fln protein: MLRAVGRRLPAISGLTRNTSPSSSLALVSSDALRDDTVISSANLPQGLQLLNTSWKSHFLFRGFSADSLAPRHELGFSDIPATIAAVKNPTSKIEYDESNHERFAPGDPSKRAFTYFVLTGGRFVYASFIRLLVLKFILSMSASKDVLAMASLEVDLSSIEAGSTVTVKWRGKPVFIRRRTEDDIQLANSVNVNSLRDPQQDSERVQNPEWLVVIGVCTHLGCVPLPNAGDYGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYKFLEDNKMLIG*

Protein Length: 277

Fln nts: CGTGGCTCATCGTTACCAGTCAGATCTGGAGGAGTACCACATATTATGCCCTAAATTGCCTTCTTCCTACATCGATCCTGTCAGATCTGGAGGAGTACCACATATTATGCCCTAAATTGCCTTCTTCCTACATCGCACAATTCACTTAGGTGGGCGATCCGGCTTTGGAGGTACAGGATCATTGGAAAG_-_ATGTTGCGAGCGGTGGGACGGAGATTGCCCGCCATTTCTGGGCTGACGAGGAATACATCTCCATCATCATCGCTGGCGTTGGTGAGCTCTGATGCACTCAGGGACGATACCGTTATTTCCTCTGCTAATCTCCCTCAGGGTTTACAGCTGTTGAATACATCGTGGAAATCTCACTTTCTCTTCCGCGGTTTTTCGGCCGATTCACTTGCTCCCAGGCATGAGCTAGGATTCTCGGATATACCTGCCACTATTGCAGCAGTTAAAAACCCAACATCGAAAATAGAGTATGATGAATCTAATCATGAGCGTTTTGCCCCTGGGGATCCCAGTAAGAGAGCATTCACCTACTTCGTTTTGACGGGTGGAAGATTTGTATATGCTTCCTTTATCCGATTGCTGGTTTTGAAATTTATTTTGAGCATGTCTGCAAGTAAGGATGTTCTTGCAATGGCATCTCTTGAAGTGGATTTATCCAGTATTGAGGCTGGCAGTACTGTCACAGTCAAGTGGCGTGGAAAGCCTGTTTTCATTAGGAGACGCACAGAAGATGACATCCAGTTGGCAAACAGTGTGAATGTTAATTCTCTGCGTGATCCTCAGCAAGATTCAGAAAGGGTTCAAAATCCTGAGTGGCTCGTTGTGATTGGTGTTTGTACCCACCTTGGTTGTGTTCCTTTGCCAAATGCTGGGGATTATGGAGGTTGGTTCTGTCCTTGTCACGGATCTCATTATGACATATCTGGCCGAATTAGGAAGGGTCCTGCACCTTATAACCTTGAGGTTCCAACATACAAATTCTTAGAGGATAATAAGATGTTAATTGGCTGA___TCTGCACATACGAAGCAAGTTATGTCTGAACACGGGATTATGCTACCAGATCGTTTTTCTGTTGTGATCTTTGGAAGCTTTTTGCCACTGATTAAATCATACCATGCTGTTATTCTCAATAAATTTTTAGATACATCTTGTTTCTGTTATTCATTTTAAGAATATCTATTATTTTGGCAAGCTTGGTTTTTTCCATTGCCTATCCGTCTCGGATCCTATTGATTTGTTATTTCCTACATAAAGTGCACTGATTATTATAAGTTCTGTGCAACTCTTGAATATATGGATATGGGATCTCGTGAGAAACTCGAGGTGGTAGAAAATAGCATCTAATGATTGCATTCTTATCAGATATATGATTATTTAAAAGAATTATGAGTATGATTATCATCATTTCC

Fln Alignment:

sp_v1.1_unigene19079___MLRAVGRRLPAISGLTRNTXXXXXXXXXXXXXXXXX-TVISSANLPQGLQLLNTSWKSHFLFRGFSADSLAPRHELGFSDIPATIAAVKNPTSKIEYDESNHERFAPGDPSKRAFTYFVLTGGRFVYASFIRLLVLKFILSMSASKDVLAMASLEVDLSSIEAGSTVTVKWRGKPVFIRRRTEDDIQLANSVNVNSLRDPQQDSERVQNPEWLVVIGVCTHLGCVPLPNAGDYGGW
B8LMH0_______________MLRAVGRRLPAISGLTRNTTSPSSSLALVSSDALKDDTVISSANPPQGLQLLNPSWKSHFLFRGFSAESLAPRHELGFSDIPATIAAVKNPTSKIEYDESNHERFTPGDPSKRAFTYFVLTGGRFVYASFIRLMVLKFILSMSASKDVLAMASLEVDLSNIEAGSTVTVKWRGKPVFIRRRTEDDIQLANSVNVNSLRDPQEDSARVLNPEWLVVVGVCTHLGCVPLPKC--WGLW

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
87	66	33			0.997452
88			66	33	0.997452
90			33	66	1.0
92			33	66	0.997452
93		66	33		0.997452
94	33	66			0.997452
95			33	66	0.997452
98		33		66	0.997452
100	33			66	0.997452
101		33	66		0.997452
103	66			33	0.997452
104	33		66		0.997452
105			66	33	0.997452
107	33	66			0.997452
108		66		33	0.997452
109			33	66	0.997452
110		33		66	0.997452
112	66	33			0.997452
114	33	66			0.997452
115	33		66		0.997452
116	33			66	0.997452
117		66		33	0.997452
119			33	66	0.997452
122	66			33	0.997452
124		33		66	0.997452
125	66			33	0.997452
126			66	33	0.997452
128		33		66	0.997452
130	33	66			0.997452
131		33	66		0.997452
132	33			66	0.997452
134		33		66	0.997452
135		66	33		0.997452
136	66	33			0.997452
141			66	33	0.997452
142		66		33	0.997452
143		33		66	0.997452
144	33		66		0.997452
145		33	66		0.997452
146	66			33	0.997452
147			66	33	0.997452
148	33	66			0.997452
149			33	66	0.997452
412		33	66		0.997452
1154	3	96			0.999856
1156		2		97	0.924243
1204			6	86	1.0
1250		93		6	0.999998
1275		6		93	0.999264

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain