SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19071

Length: 3138 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene19071
TGTCTTGACCTTGGCTGTCACTCATGGGCCTCTTTTTCATTCATCTCTCATATCTGGGTGGTCTGTCTGTGAGCTTGTCACTTTTTGTTCCATATTCAAAGCCATCCATTCGCCTTCTCCCTCCTTCACCTTCCACCTCCTTCGCTTCCTCCCTTCATACTCGCTATCGAAAGATTACAAATTTGTCCGACTTGCAATCTCGTACATTTTCACTCAAATTCAAAGACGAGATGCTGGTAGATCCAAGTACAAGGCGGGCACAAGTTCAGCACGCATATGAAGTAAGGTCAGATTTAAGGTATTTTTCGTCCTAGGGTTTTAAATTTTTGGAGATCAGATCAGATGCATGGATCCGTTTGCAGAAGTCGAGCTTATGGTTATTCTTATAGATACTGCTATGATGGGGCATTTTATTTAACCTAAATCTCAATCATCGCTTCAATACGGGAGGGGGAAACTAAAATTTCCGTAAGGACCGAAGAGAAAAAAAGAAGAAGGGGAAAAAGAATTTGTGGGGTTTGAATGAAAAGAATTCATCCTTGAAAAGATGACGGAGAATGAGGTGCCATTATTTCTTCATCTGCGCAGAGAGCCATTCGAATATGGACTCCTACCCCTTCCCAACCTTATGTTCACGGACGGAACCTCCACATTGAAAGGCGTCAGAGAGAAACTTATCCAGAATTCTTTTACTTACACTGTAAATAATAATAATAATAGTAGCAATAATGATGATAATAATAATGATAATAATGGGGAGGTGTCCAGATCATTTAGCAGGCGCGTGAATACCACTGGCATCGCAGAGAGCTTACAGCTTTCCGAAGACCATGCTCGTGTTGTCATAGATACGCTGGCTTCTGTGCTGCCCGAACATGGGCAAGGAGGAGGAGCAGCGGATCCCCTCATTCATGCTTCGTATGTTGATGTGGACTCCATCGGCGCCGACGTATATGATTTGATACTGTTCCTGTTCATACAAACTTATAAGAAGCTTGTGCCCCGGACTCACAAGGATGCGGCGTCGGTTGCCGATGTTTGGCCTTCAACTTCTGCTTTCGATGGAATTTTTGCAACTCTTTCGCCACTCCAACTCATGAGATCTGGTCGACGATTTATGCCATCCCAAGCAGATGAGGAGGCTCACCAGCTATCGTATGTGCAGAAACATTTGCCAAATATATTGGGTTTATTAGCAGAGTCATCAGACAATGAAAGTGCAGATATGCAGGTTTTAAGCTCAGAGAGTTTTGAGCATCTTGGATTACTTTTTCATGTTAGGGAAAGAGGCACAGAAGACAGGTCTCTTAGCCAAGTAGCTCCTTTTTTCGCAAACTCAGATCCCGATATGCCTGCTGTTCCAGTACCTGTTCCACAGGTTCTTGATTGGATACTTGAACATATTTGTGCCGCATCAGATAATCCTCTCGAAAAAGTGCTTGGTGGAGAAAATGGGTCCTCCATTGTTGGTGATTTGGATATTACAAAGAATGATTCATGCGGTAGCAGTTCTGGATGTCAATCTGGTGCATTCCCAAATGGTTACAATCAGCAGCAGAAAGATGCTCATTTAAAGCTGACTTTTGTGGAGGGCGTTAATAAAGCATCAGTAATGAAGCAAGCTAGTGATATTGAAGGATCTTCAGTCAAGGTCTTGAACTGCCATGATTCAGTGATATACATATTAGCACCCTTGAATTATGCAACCGTCAATGGGTGTTCAGATGCTACTATCCTTCTTGGACCTGTTGGGAAGGCTGTAAGAATAGAGCATTGTGAACGTGTAAATGTGATCGTTGCAACGATGCATATTTGCATAGCAAATTGTCGTGAATGCATTTTCTACTTAGGTGTGAATAAGCATCCAATAATTTCCGGCAACAATCACAACTTACAGGTGGCGCCATATAATACATTTTATCCGGATCTAGAGATGCATTTGGCACAAGTCGGTGTAGATCCAACAGTCAATTTGTGGGACAAGCCTTTGGCACTAGGAATGGTAGACCCACATGATTCTCTATCTCATCCGGTGGGTGTTTCTGATGTACAAGCTGAGTCGGCTAATGTTCTTCATCCAGACCAGTTCTTGAACTTTGTGATTCCAAAATGGTTTGAAGTGGAATCCAAATTTCAACAAACAAAAGACAATCCGTTTATATTACCAAATCGATACATGGCAGCACAACAGCAAAAGTATAACTCACTCGAGGATACGAGAGGATCTTTGAGAAACACTCAACTGGATGATAGTAAAAAGCGTGAACTAGTGAGTGCAATCCATGGCCATTTCAAGGACTGGCTATATGCATCTGGTAATATACGTCAGCTCTATTGTCTACAAAGTTCTGAACTGGATTCAAGGGAGATTGACTGATTGGGGAATTCTGCCCAATGGACTGACCTTATGTCATAGGGTTGTAGAGGATGCTTTTGTAGAGCTTGTTGTATATGGACTTTATTTTACTTTCAGATTATTTCATCATGCCAGTCCTGGATTTACAGATTTACATCGATTTGGAGGTTCTCATTTGGCTTATGGCAGGCTATCCAAAAAGGTGCCCTTTTTGAACCAGATTGCAGGATTGCAACATCAAAGATTGATTTTCTTCATGGGATCCTGAGAGAATCTTGTATTAAGTCAGCCTGTAGTTGCGTCATATGTTTCTCACTAAATATTAATTCGAAGTGTATCATTGAATGAGCTCATTTGTCATGTGTACTTTAGGAAAATGGCTGTATTCTAGACACGTGAACATGTATTTTAAGGGTAAGCACCACCCTCATTTATTAAGACCTGAGGAAGATATTTGCGGATATTCAATTTTATTTTGATTGCATGTGCCTCTCTATTAATTATCATGAAGCATCTTGTATGACTTTCAGCAAGTCATGCTGTTGAATAAACAAAGTTACTGGTTACTTGACAAGTAAGGCCCCAAGTGTCAATGCATTTATTAGATTTGATTGACAATGTATTCATTATGCCATGTGAAGCTTAGGCAATTTTCATCTGAGTGTCATACATTGGCTTTACAATGACCATATGTCTTCACTCTAGAGGCATCAGGTAAGAACTCTCTTGCACAAGNTGTAGTATTGGAGCAGAAGCTACTGGGTGGCTGTCGTCGTCCTTGA

Ace file of the UniGene sp_v1.1_unigene19071

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	tubulin-specific chaperone C-related	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	tubulin-specific chaperone c-related	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	69%

Source	InterPros	Term	Type	Identity
Blast2go	CARP motif	IPR006599	-	69%
Blast2go	Tubulin binding cofactor C	IPR012945	-	69%
Blast2go	C-CAP/cofactor C-like domain	IPR017901	-	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKK2

Fln msg:

Fln protein: MTENEVPLFLHLRREPFEYGLLPLPNLMFTDGTSTLKGVREKLIQNSFTYTVNNNNNSSNNDDNNNDNNGEVSRSFSRRVNTTGIAESLQLSEDHARVVIDTLASVLPEHGQGGGAADPLIHASYVDVDSIGADVYDLILFLFIQTYKKLVPRTHKDAASVADVWPSTSAFDGIFATLSPLQLMRSGRRFMPSQADEEAHQLSYVQKHLPNILGLLAESSDNESADMQVLSSESFEHLGLLFHVRERGTEDRSLSQVAPFFANSDPDMPAVPVPVPQVLDWILEHICAASDNPLEKVLGGENGSSIVGDLDITKNDSCGSSSGCQSGAFPNGYNQQQKDAHLKLTFVEGVNKASVMKQASDIEGSSVKVLNCHDSVIYILAPLNYATVNGCSDATILLGPVGKAVRIEHCERVNVIVATMHICIANCRECIFYLGVNKHPIISGNNHNLQVAPYNTFYPDLEMHLAQVGVDPTVNLWDKPLALGMVDPHDSLSHPVGVSDVQAESANVLHPDQFLNFVIPKWFEVESKFQQTKDNPFILPNRYMAAQQQKYNSLEDTRGSLRNTQLDDSKKRELVSAIHGHFKDWLYASGNIRQLYCLQSSELDSREID*

Protein Length: 611

Fln nts: TGTCTTGACCTTGGCTGTCACTCATGGGCCTCTTTTTCATTCATCTCTCATATCTGGGTGGTCTGTCTGTGAGCTTGTCACTTTTTGTTCCATATTCAAAGCCATCCATTCGCCTTCTCCCTCCTTCACCTTCCACCTCCTTCGCTTCCTCCCTTCATACTCGCTATCGAAAGATTACAAATTTGTCCGACTTGCAATCTCGTACATTTTCACTCAAATTCAAAGACGAGATGCTGGTAGATCCAAGTACAAGGCGGGCACAAGTTCAGCACGCATATGAAGTAAGGTCAGATTTAAGGTATTTTTCGTCCTAGGGTTTTAAATTTTTGGAGATCAGATCAGATGCATGGATCCGTTTGCAGAAGTCGAGCTTATGGTTATTCTTATAGATACTGCTATGATGGGGCATTTTATTTAACCTAAATCTCAATCATCGCTTCAATACGGGAGGGGGAAACTAAAATTTCCGTAAGGACCGAAGAGAAAAAAAGAAGAAGGGGAAAAAGAATTTGTGGGGTTTGAATGAAAAGAATTCATCCTTGAAAAG_-_ATGACGGAGAATGAGGTGCCATTATTTCTTCATCTGCGCAGAGAGCCATTCGAATATGGACTCCTACCCCTTCCCAACCTTATGTTCACGGACGGAACCTCCACATTGAAAGGCGTCAGAGAGAAACTTATCCAGAATTCTTTTACTTACACTGTAAATAATAATAATAATAGTAGCAATAATGATGATAATAATAATGATAATAATGGGGAGGTGTCCAGATCATTTAGCAGGCGCGTGAATACCACTGGCATCGCAGAGAGCTTACAGCTTTCCGAAGACCATGCTCGTGTTGTCATAGATACGCTGGCTTCTGTGCTGCCCGAACATGGGCAAGGAGGAGGAGCAGCGGATCCCCTCATTCATGCTTCGTATGTTGATGTGGACTCCATCGGCGCCGACGTATATGATTTGATACTGTTCCTGTTCATACAAACTTATAAGAAGCTTGTGCCCCGGACTCACAAGGATGCGGCGTCGGTTGCCGATGTTTGGCCTTCAACTTCTGCTTTCGATGGAATTTTTGCAACTCTTTCGCCACTCCAACTCATGAGATCTGGTCGACGATTTATGCCATCCCAAGCAGATGAGGAGGCTCACCAGCTATCGTATGTGCAGAAACATTTGCCAAATATATTGGGTTTATTAGCAGAGTCATCAGACAATGAAAGTGCAGATATGCAGGTTTTAAGCTCAGAGAGTTTTGAGCATCTTGGATTACTTTTTCATGTTAGGGAAAGAGGCACAGAAGACAGGTCTCTTAGCCAAGTAGCTCCTTTTTTCGCAAACTCAGATCCCGATATGCCTGCTGTTCCAGTACCTGTTCCACAGGTTCTTGATTGGATACTTGAACATATTTGTGCCGCATCAGATAATCCTCTCGAAAAAGTGCTTGGTGGAGAAAATGGGTCCTCCATTGTTGGTGATTTGGATATTACAAAGAATGATTCATGCGGTAGCAGTTCTGGATGTCAATCTGGTGCATTCCCAAATGGTTACAATCAGCAGCAGAAAGATGCTCATTTAAAGCTGACTTTTGTGGAGGGCGTTAATAAAGCATCAGTAATGAAGCAAGCTAGTGATATTGAAGGATCTTCAGTCAAGGTCTTGAACTGCCATGATTCAGTGATATACATATTAGCACCCTTGAATTATGCAACCGTCAATGGGTGTTCAGATGCTACTATCCTTCTTGGACCTGTTGGGAAGGCTGTAAGAATAGAGCATTGTGAACGTGTAAATGTGATCGTTGCAACGATGCATATTTGCATAGCAAATTGTCGTGAATGCATTTTCTACTTAGGTGTGAATAAGCATCCAATAATTTCCGGCAACAATCACAACTTACAGGTGGCGCCATATAATACATTTTATCCGGATCTAGAGATGCATTTGGCACAAGTCGGTGTAGATCCAACAGTCAATTTGTGGGACAAGCCTTTGGCACTAGGAATGGTAGACCCACATGATTCTCTATCTCATCCGGTGGGTGTTTCTGATGTACAAGCTGAGTCGGCTAATGTTCTTCATCCAGACCAGTTCTTGAACTTTGTGATTCCAAAATGGTTTGAAGTGGAATCCAAATTTCAACAAACAAAAGACAATCCGTTTATATTACCAAATCGATACATGGCAGCACAACAGCAAAAGTATAACTCACTCGAGGATACGAGAGGATCTTTGAGAAACACTCAACTGGATGATAGTAAAAAGCGTGAACTAGTGAGTGCAATCCATGGCCATTTCAAGGACTGGCTATATGCATCTGGTAATATACGTCAGCTCTATTGTCTACAAAGTTCTGAACTGGATTCAAGGGAGATTGACTGA___TTGGGGAATTCTGCCCAATGGACTGACCTTATGTCATAGGGTTGTAGAGGATGCTTTTGTAGAGCTTGTTGTATATGGACTTTATTTTACTTTCAGATTATTTCATCATGCCAGTCCTGGATTTACAGATTTACATCGATTTGGAGGTTCTCATTTGGCTTATGGCAGGCTATCCAAAAAGGTGCCCTTTTTGAACCAGATTGCAGGATTGCAACATCAAAGATTGATTTTCTTCATGGGATCCTGAGAGAATCTTGTATTAAGTCAGCCTGTAGTTGCGTCATATGTTTCTCACTAAATATTAATTCGAAGTGTATCATTGAATGAGCTCATTTGTCATGTGTACTTTAGGAAAATGGCTGTATTCTAGACACGTGAACATGTATTTTAAGGGTAAGCACCACCCTCATTTATTAAGACCTGAGGAAGATATTTGCGGATATTCAATTTTATTTTGATTGCATGTGCCTCTCTATTAATTATCATGAAGCATCTTGTATGACTTTCAGCAAGTCATGCTGTTGAATAAACAAAGTTACTGGTTACTTGACAAGTAAGGCCCCAAGTGTCAATGCATTTATTAGATTTGATTGACAATGTATTCATTATGCCATGTGAAGCTTAGGCAATTTTCATCTGAGTGTCATACATTGGCTTTACAATGACCATATGTCTTCACTCTAGAGGCATCAGGTAAGAACTCTCTTGCACAAGaTGTAGTATTGGAGCAGAAGCTACTGGGTGGCTGTCGTCGTCCTTGA

Fln Alignment:

sp_v1.1_unigene19071___MTENEVPLFLHLRREPFEYGLLPLPNLMFTDGTSTLKGVREKLIQNSFTYTVXXXXXXXXXXXXXXXXXGEVSRSFSRRVNTTGIAESLQLSEDHARVVIDTLASVLPEHGQGGGAADPLIHASYVDVDSIGADVYDLILFLFIQTYKKLVPRTHKDAASVADVWPSTSAFDGIFATLSPLQLMRSGRRFMPSQADEEAHQLSYVQKHLPNILGLLAESSDNESADMQVLSSESFEHLGLLFHVRERGTEDRSLSQVAPFFANSDPDMXXXXXXXXXXLDWILEHICAASDNPLEKVLGGENGSSIVGDLDITKNDXXXXXXXXXXXAFPNGYNQQQKDAHLKLTFVEGVNKASVMKQASDIEGSSVKVLNCHDSVIYILAPLNYATVNGCSDATILLGPVGKAVRIEHCERVNVIVATMHICIANCRECIFYLGVNKHPIISGNNHNLQVAPYNTFYPDLEMHLAQVGVDPTVNLWDKPLALGMVDPHDSLSHPVGVSDVQAESANVLHPDQFLNFVIPKWFEVESKFQQTKDNPFILPNRYMAAQQQKYNSLEDTRGSLRNTQLDDSKKRELVSAIHGHFKDWLYASGNIRQLYCLQSSELDSREID
B8LKK2_______________MTENEVPLFLHLRREPFEYGLLPLPHLMFTDGTSTLKSVREKLLQNSFTYTVNNNNHNSNNDDNNNDNNGEVSRSFSRRVNATGIAESLQLSEDHARVVIDTLAAVLPEYGRGGGAADPLVHASYVDVDSIGADVYDLILFLLIQTYKKLVPRPHKDAASVADVWPSTSAFDGIFATLSPLQLMRSGRRFMPSQADEEAHQLHYVQKNLPNILGLLAEPSDNESADMQVLSSESFEHLGLLLHVRERGTEDRSLSQVAPFFANSDPDMPAVPVPVPQVLDWILEHICAAPDHPLERVLGGENGSSTVGDLDITKNDSYTSSSGSQSGAFPNGYNQQQKDAHLKLTFVEGVTKASVVKQPVDIEGSSVKVLNCHDSVIYILAPLNYATVNGCSDATILLGAVGKAVRVEHCERVNVIVPTMHICIANCRECNFYLGVNKQPIISGNNHILQVAPYNTFYPDLEMHLAQVGVDPTVNMWDKPLALGMVDPHDSLSHPAGVSDVQAESAAVLHPDQFLNFVIPKWFEVESKFQQTKDNPFILPNPYMAAQQQKYTSLEDMRASLRNTQLDDTKKRELASAIHGHFKDWLYASGNIRQLYCLQSNELDSREID

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
11	33			66	0.997452
15		66	33		0.997452
16			33	66	0.997452
18	33			66	0.997452
19	33	66			0.997452
25		66		33	0.997452
26	66			33	0.997452
29	33		66		0.997452
30		33	66		0.997452
32		60	40		1.0
35			33	66	1.0
37			33	66	1.0
38	33			66	1.0
39		33		66	1.0
41	66			33	1.0
44			33	66	1.0
47	66		33		1.0
50	33			66	1.0
60			66	33	1.0
64		14	57	28	1.0
66			28	71	1.0
70	14			85	0.993533
72		14		85	0.993533
73			85	14	0.993533
81		14	85		0.993533
140		88		11	0.999952
156		70	29		1.0
388		85	14		0.993533
389			14	85	0.993533
390			14	85	0.993533
411		25	75		0.996473
967	33		66		0.997452
985	66	33			0.997452
1003		33		66	0.997452
1192	83		16		0.994512
1193			16	83	0.994512
1194			16	83	0.994512
1528			16	83	0.994512
1623		11		88	0.923564
1834		21	5	73	1.0
1960		87		12	0.999964
2131	11		88		0.923564
2740	83		5		0.999887
2773		9		63	1.0
2809		44		55	1.0
2831		12		87	0.992554
2834	83	16			0.994512
2922			54	45	1.0
2937	90			10	0.90298
2938		90		10	0.90298
2939	88			11	0.923564
2941			88	11	0.923564
2943	88	11			0.923564
2948		37		62	1.0
2953			62	37	1.0
2989		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
704	719	AAT AAT AAT AAT AAT A	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain