SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19063

Length: 1262 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19063

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	dead box ATP-dependent RNA helicase, putative	-	-	7.9874e-44	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	dead box-like rna helicase	-	-	0.0	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	helicase activity	GO:0004386	Molecular Function	0.0	72%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Helicase, C-terminal	IPR001650	-	0.0	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUU4

Fln msg: your sequence is shorter than subject: 224 - 408

Fln protein: ALTGAEKRYKLPEQLKIYTLICESNLKRLSLVSLLQLLKGEQTIVFTSSVVSTHRLCTLLNCFEGLALRIIEYSSLQHQSSRSKALDAFRAGDAEVLVASDAMTRGMDVEGVMNVVNYDMPSYAKTYVHRAGRTARAGRSGSCFTLLRREEVKRFRKLLEKADNNKSSNYRLPVDSIEKLHPSYSAALEKLKEIVKCETTGQHQSSSKLVVASKTEEWIETET*

Protein Length: 225

Fln nts: GCTTTAACTGGAGCAGAAAAACGTTACAAGCTTCCTGAGCAACTGAAAATTTACACATTGATTTGTGAGTCAAACTTGAAGCGTCTGTCTTTGGTGTCACTGTTGCAGCTTTTGAAAGGGGAGCAGACCATTGTTTTCACATCTTCTGTTGTTTCTACCCATAGGTTATGTACCTTATTGAACTGTTTCGAAGGGCTGGCCTTAAGGATAATTGAATATTCAAGCTTACAACATCAATCTTCACGAAGTAAAGCGTTGGATGCATTTAGGGCAGGAGATGCTGAAGTGCTAGTTGCTTCTGATGCAATGACCCGTGGGATGGATGTGGAAGGTGTGATGAATGTTGTCAACTATGACATGCCTTCATATGCAAAGACATACGTTCACCGTGCTGGTCGTACTGCCCGGGCAGGGCGGTCAGGAAGCTGTTTCACCTTATTGCGAAGAGAGGAGGTTAAACGTTTCAGAAAGCTACTTGAAAAAGCTGATAATAATAAATCTAGCAACTACAGGTTACCTGTAGATTCAATAGAAAAACTTCATCCCTCGTATTCTGCAGCATTGGAGAAGTTGAAAGAAATTGTGAAATGTGAAACAACTGGACAACACCAGAGTTCTTCAAAATTGGTGGTGGCAAGTAAAACTGAAGAGTGGATTGAGACTGAAACTTGA___AACAAGAATGTGATTATTGAGTCCACAATTTTCCTGGGCCCACTGCAAGGAATCTAATGCCGCTTGTTGCATTCGGCAGGATGAATTCATTATTTCCAGAATGTCTCTTGTCTATGTTTAGGAAAGTAAATTTCTGTGCTTGTAGCTAACAGGTTTTCTTATGATTTCTCAAGGGCTGACAAAGGCAGGCCCGTTAAATTAAGCTGGAAATATGGAGAGTAAAATGAGTTCCTTAGGTAAATTCCATGTTAACTGATTTGAAATCACGATGATGCAAACCTACTGTGTAGCTTTTAGATCAAAGTGACTTTGATTGAAGCAAGTTTTGTAAAATGTGAAGATTTTCTCCAAAAAGTGAAAATGTATGTAAACTACAATGATGCATCTCCTTCAATGGATATGAATATCAGTGCTGTAAGAAAGGTGCCCTTATGTGATGATTTAGTGGGGTATATTGGTCTCTGAAAAACTTTGTACCAAGGCTTCTGCAACCCGTCTTCTACAAAAATTCATGGGGGGATGGTTACTGCTTTGAGGCACATACATGAGAAATTTCATATATTGCTACCCTAAGCTATACTTCCTGCTAG

Fln Alignment:

sp_v1.1_unigene19063___QSSRSKALDAFRAGDAEVLVASDAMTRGMDVEGVMNVVNYDMPSYAKTYVHXXXXXXXXXXXXXCFTLLRREEVKRFRKL
A9NUU4_______________QKERDAIMAEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDIRILRDI

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
166		37	62		1.0
169		37		62	1.0
170	62		37		1.0
174	87		12		0.992554
180	62		37		1.0
181		37		62	1.0
185	62	37			1.0
287		88		11	0.923564
354		87	12		0.992554
545			27	72	1.0
548	63		27	9	1.0
550		72	27		1.0
555		72		27	1.0
557			27	63	1.0
558	72	27			1.0
563	27			72	1.0
566	72			27	1.0
567		27	72		1.0
568	27	72			1.0
611	90		10		0.90298
659	10		90		0.90298
665		10		90	0.90298
667	90			10	0.90298
671		10		90	0.90298
672			90	10	0.90298
673	90			10	0.90298
674	90		10		0.90298
675	90		10		0.90298
679		10	90		0.90298
681	90	10			0.90298
682	90			10	0.90298
696	90			10	0.90298
698			10	90	0.90298
700	90	10			0.90298
705	90			10	0.90298
742	16		83		0.999991
765	85	14			0.999981
811		15		84	0.999986
812			15	84	0.999986
817	15			84	0.999986
818		15	84		0.999986
823			14	85	0.999981
824	78	21			1.0
825			85	14	0.999981
826		78	14	7	0.999974
828	85	14			0.999981
831	78			21	1.0
832		14	85		0.999981
833	14		85		0.999981

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain