SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19031

Length: 1224 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene19031 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	OHP2 n=3 Tax=Andropogoneae RepID=B6T7T3_MAIZE	-	-	2.0e-32	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	one helix protein 2	-	-	0.0	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to light intensity	GO:0009642	Biological Process	0.0	65%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	0.0	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN16

Fln msg:

Fln protein: MSLTPTLPSIFLPSSTNSNPGNAVKLPNRLCVRSSKAEGPLRRPSSPTIKEATPPMRPVPPSPPPSSDSSAPPPPPPPGPIIPSAKVGVKPSTSPLVTLEYQRQRAKELQEYFTQKKIEDQASRAKVFGFTPKNEISNGRWAMFGFAVGLLTEYATGSDFVDQMKILISNFGIADLE*

Protein Length: 179

Fln nts: TATATATATAACGTCTTCTTCGTGACCTTGGCTTTCATGTACTTCAAACTTACATAGATAATCTTGGAATCAAGATGCACGTATGCTGCTCAGAAATTAATATCGGTGATCATATCTTTCTAGGCATCTGGTGACAAAACCAATTTAGAACCACTCAGCCCAATTGCGGTCGTTTCGTTGAACAAAATTTGGTCGAGGGAGTCTCGTTGGACCAACCTTATCCACCTGTTGCAGCTCGTCTGATATATGACGCTAACCATGTCGATCTTACAGGCGGCAGGAAATTTGATTCTGCAGATGGGTGAGTAACATAGCACTCCTCCTTTTCCCATCCCCACAAATACAACATCCATCCTCCAATCCCGTTTCTATATTCAAAA_-_ATGTCTCTAACCCCAACTCTCCCCTCCATATTTCTCCCTTCGTCCACCAATTCAAATCCCGGGAATGCAGTGAAATTACCGAACAGACTGTGTGTGCGGAGCTCCAAGGCCGAAGGGCCCTTGAGAAGGCCGAGCAGCCCCACCATTAAAGAGGCCACCCCTCCCATGAGGCCAGTACCTCCATCTCCTCCACCTTCCTCTGATTCTTCTGCACCTCCACCACCGCCTCCTCCTGGCCCAATTATTCCTTCTGCTAAAGTTGGGGTTAAACCATCTACTTCTCCATTAGTGACTCTGGAGTACCAGAGGCAGAGAGCGAAGGAATTGCAGGAATATTTCACTCAGAAAAAGATTGAGGATCAGGCTTCTAGAGCTAAAGTATTTGGATTCACTCCCAAGAACGAAATCTCTAATGGAAGATGGGCAATGTTTGGATTTGCAGTTGGATTATTAACGGAGTATGCAACAGGTTCAGACTTCGTTGATCAGATGAAGATACTCATCTCCAATTTCGGAATAGCGGATCTCGAGTGA___TACAATATTCAGGAGGCTATGCCAATGAGGAAGTCTGCATCAGCAAGTAAAATGAGCTTTTGGTTAAGTAATTGTATGATGAATCTGAACAGGACTGTGGCATTGCATGTAATATATACTTTCAATGCTTTTTCCTGTATTGTTGTCTTGTATTCTTTTATACCAGTTTCATTGTTGGTTTATTTTTCCATGACTATTGGGAAAATGGAAAAAGGAACACCTTTAGACTGAGCTTTTTTTCTTCTTCTTGCAATCTTAAAAATTAAACTGGTGATATTGGGCGGTATGTTGTGTTTATGTGTGATTACTC

Fln Alignment:

sp_v1.1_unigene19031___MSLTPTLPSIFLPSSTNSNPGNAVKLPNRLCVRSSKAEGPLRRPSSPTIKEATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAKVGVKPSTSPLVTLEYQRQRAKELQEYFTQKKIEDQASRAKVFGFTPKNEISNGRWAMFGFAVGLLTEYATGSDFVDQMKILISNFGIADLE
A9NN16_______________MSLTPTLPSIFLPSSTNSKPGNAVKLPNKLCVRSSKAEGPLRRPSSPTIKEATPPMRPVPPSSPPSSDSSAPPPPPPPGPSIPSAKVGVKPSSSPSVTVEFQRQRAKELQEYFSLKKIEDQASQTKVFGFTPKNEISNGRWAMFGFAVGLLTEYATGSNFVDQMKILISNFGIADLE

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
204			83	16	0.994512
209	33			66	1.0
232	83			16	0.994512
251	83			16	0.994512
252	83		16		0.994512
255		66		16	0.988813
256			16	83	0.994512
257	16	66			0.988813
258	16	16	66		0.988813
259	33			66	1.0
260			33	66	1.0
261		16		83	0.994512
262	16		16	66	0.988813
264		83	16		0.994512
265	16		16	66	0.988813
267		16	83		0.994512
268	16	83			0.994512
269		33		66	1.0
270	16		83		0.994512
272		16	16	66	0.988813
276		25	75		0.996473
277	25		75		0.996473
279			25	75	0.996473
321			33	66	0.997452
322		66		33	0.997452
323		66	33		0.997452
324	33		66		0.997452
328			33	66	0.997452
332	66		33		0.997452
334	66		33		0.997452
335	66		33		0.997452
337		33		66	0.997452
338	33		66		0.997452
339		33	66		0.997452
343		33		66	0.997452
953		14		85	0.993533
954		14	85		0.993533
955		14		85	0.993533
957	85			14	0.993533
995	83		16		0.994512
1049		20	60	20	0.99255
1050	60	20	20		0.99255
1051	80	20			0.995493
1053	80		20		0.995493
1054		60		40	1.0
1058	25	75			0.996473
1061	25	25			0.995533
1068			75	25	0.996473
1070	25			75	0.996473
1072		25	75		0.996473
1073	75	25			0.996473
1075	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain