SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19030

Length: 2045 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene19030
CGTCGTGACCTTGGCTGTCATGGGGAATTGACTGAAGTCGGTTCTGGAAACCTCTCTTCCTGCGTTGGATTTGTTCTTCTGTTCTCGGAATCTTGAGCTAGAGATCCTGAAGCAATTTGTGCTCGAATTCCATGGCTGGCAACGGTGCTTTTGGTGAACTTCTTGAAGGAGAGGTGTTTAAATATTACTACGATGGCGAATGGAGAGCGTCTTCTTCGGGGAAATCGGTGGCCATTATCAATCCTACGACTAGGAAGACACAGTACAGGGTTCAAGCTTGTACGCAGGAAGAAGTGAATAAGGTTGTGGACTCTTCTAGGGTTGCTCAAAAGGCATGGGCAAAGACTCCCCTTTGGAAACGGGCAGAGCTTCTGCACCGTGCAGCTGCATTACTGAAAGAACACAAGAATCCCATAGCAGAATGTCTTGTCAAGGAAATTGCCAAACCTGCAAAGGATGCTGTTACAGAGGTTGTAAGGTCTGGAGATCTCATTTCTTACTGCGCTGAGGAGGGAGTGAGGATTCTTGGTGAAGGCAAATTTCTTGTATCGGATAGTTTCCCTGGCAATGATAGAAACAAATTGTGTCTGTCCTCAAAGATTCCTCTGGGTGTCATTTTAGCTATTCCCCCATTCAACTATCCTGTAAATCTTGCTGTGTCTAAGATTGGTCCTGCCCTTATTGCTGGGAATTCAATTGTGTTGAAGCCGCCAACTCAGGGAGCCGTAGCAGCCTTGCACATGGTACACTGCTTCCATTTGGCTGGATTCCCAAAGGGCCTTATCAGTTGTGTCACAGGAAAGGGATCTGAAATTGGTGATTTTCTCACAATGCATCCGGGTATAGGCTGTATTAGTTTCACTGGGGGTGACACTGGTATTGCAATTTCCAAAAAGGCTGGCATGATTCCTCTTCAGATGGAATTAGGTGGAAAAGATGCCTGTATTATACTTGAGGACGCTGATCTGGATCTGGCAGCAGCCAATGTTGTCAAGGGAGGCTTTTCTTACAGTGGTCAGAGGTGTACTGCGGTCAAAGTAGTCCTTGTGATGGAATCAGTTGCAGATATTATTGTAGAGAAGGTGAATGCCAAAATTGCAAAGATGACTGTTGGCCCACCAGAAGAAAACTGTGAGATCACCCCGGTTGTCACAGAATCCTCTGCAAATTTCATTGAGGGTCTTGTTATGGATTCCAAGCAAAAAGGAGCCAAACTCTGCCAGGAGTACAAGAGAGAGGGTAACCTTATATGGCCTCTTTTGGTAGACCACGTGAGGCCTGACATGAGACTTGCTTGGGAAGAGCCATTTGGGCCAGTCTTGCCCGTCATTAGGATCAACTCTGTTGAAGAAGGCATTCATCATTGCAATGCCAGCAATTTTGGACTCCAGGGATGTATATTCACAAAAGACATCAACAAAGCAATCATGATAAGTGATGCCATGGAAACTGGAACAGTTCAAATTAACTCCGCACCTGCCCGGGGACCGGATCATTTTCCTTTCCAGGGTCTGAGAGACAGTGGCATTGGTTCTCAGGGAATCACAAATAGCATTCTCATGATGACGAAAGTCAAGAGCACTGTCATCAACTTGCCTACTCCTTCGTTTACAATGGGTTGATCTGAGTATTTAGATTTATAATATAAGATGTCTTAGGATTTTGCTGTATGATGAGTGAGAAAGCTGTTATTTTCCTTGCTTTTGAGTGTTAGAAAGGAATGGGTTTCCATATGATTTATTAAAACGCTGGTATGGAACAGCGTATAGCCCTGATTAATAATATGCCCTTCTAATTATTATTAATAAATTCTTCTAGTCAAAATCAATTCTATTAGCGATGGAATTTAGAAAAGAATATAAGAATTCTAATGCACAAATTTCCCCCTTCTAAACGAATTTGGAAAACACGTTTATTTGAACCTGTGAACTTTCTATGCCCCTCACAACTTGGGACATGTTTGTGACTCAATATCGGGTTCCAGAGAATTTATCTTTCAATTGGTGAACAATCTACTTTTTCAATTTGTCAAGAATCTGCTTTTT

Ace file of the UniGene sp_v1.1_unigene19030

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase n=7 Tax=Poaceae RepID=GAPN_MAIZE	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	glyceraldehyde-3-phosphate dehydrogenase	-	-	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glyceraldehyde-3-phosphate dehydrogenase (NADP(+)).	EC:1.2.1.9	-	0.0	95%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010		0.0	95%
Blast2go	Metabolic pathways	01100		0.0	95%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	95%
Blast2go	response to stress	GO:0006950	Biological Process	95%
Blast2go	glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	GO:0008886	Molecular Function	95%
Blast2go	cytosol	GO:0005829	Cellular Component	95%

Source	InterPros	Term	Type	Identity
Blast2go	Aldehyde dehydrogenase domain	IPR015590	-	95%
Blast2go	Aldehyde dehydrogenase, conserved site	IPR016160	-	95%
Blast2go	Aldehyde/histidinol dehydrogenase	IPR016161	-	95%
Blast2go	Aldehyde dehydrogenase, N-terminal	IPR016162	-	95%
Blast2go	Aldehyde dehydrogenase, C-terminal	IPR016163	-	95%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2J6

Fln msg: your sequence is longer than subject: 497 - 293

Fln protein: MAGNGAFGELLEGEVFKYYYDGEWRASSSGKSVAIINPTTRKTQYRVQACTQEEVNKVVDSSRVAQKAWAKTPLWKRAELLHRAAALLKEHKNPIAECLVKEIAKPAKDAVTEVVRSGDLISYCAEEGVRILGEGKFLVSDSFPGNDRNKLCLSSKIPLGVILAIPPFNYPVNLAVSKIGPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGIGCISFTGGDTGIAISKKAGMIPLQMELGGKDACIILEDADLDLAAANVVKGGFSYSGQRCTAVKVVLVMESVADIIVEKVNAKIAKMTVGPPEENCEITPVVTESSANFIEGLVMDSKQKGAKLCQEYKREGNLIWPLLVDHVRPDMRLAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCIFTKDINKAIMISDAMETGTVQINSAPARGPDHFPFQGLRDSGIGSQGITNSILMMTKVKSTVINLPTPSFTMG*

Protein Length: 498

Fln nts: CGTCGTGACCTTGGCTGTCATGGGGAATTGACTGAAGTCGGTTCTGGAAACCTCTCTTCCTGCGTTGGATTTGTTCTTCTGTTCTCGGAATCTTGAGCTAGAGATCCTGAAGCAATTTGTGCTCGAATTCC_-_ATGGCTGGCAACGGTGCTTTTGGTGAACTTCTTGAAGGAGAGGTGTTTAAATATTACTACGATGGCGAATGGAGAGCGTCTTCTTCGGGGAAATCGGTGGCCATTATCAATCCTACGACTAGGAAGACACAGTACAGGGTTCAAGCTTGTACGCAGGAAGAAGTGAATAAGGTTGTGGACTCTTCTAGGGTTGCTCAAAAGGCATGGGCAAAGACTCCCCTTTGGAAACGGGCAGAGCTTCTGCACCGTGCAGCTGCATTACTGAAAGAACACAAGAATCCCATAGCAGAATGTCTTGTCAAGGAAATTGCCAAACCTGCAAAGGATGCTGTTACAGAGGTTGTAAGGTCTGGAGATCTCATTTCTTACTGCGCTGAGGAGGGAGTGAGGATTCTTGGTGAAGGCAAATTTCTTGTATCGGATAGTTTCCCTGGCAATGATAGAAACAAATTGTGTCTGTCCTCAAAGATTCCTCTGGGTGTCATTTTAGCTATTCCCCCATTCAACTATCCTGTAAATCTTGCTGTGTCTAAGATTGGTCCTGCCCTTATTGCTGGGAATTCAATTGTGTTGAAGCCGCCAACTCAGGGAGCCGTAGCAGCCTTGCACATGGTACACTGCTTCCATTTGGCTGGATTCCCAAAGGGCCTTATCAGTTGTGTCACAGGAAAGGGATCTGAAATTGGTGATTTTCTCACAATGCATCCGGGTATAGGCTGTATTAGTTTCACTGGGGGTGACACTGGTATTGCAATTTCCAAAAAGGCTGGCATGATTCCTCTTCAGATGGAATTAGGTGGAAAAGATGCCTGTATTATACTTGAGGACGCTGATCTGGATCTGGCAGCAGCCAATGTTGTCAAGGGAGGCTTTTCTTACAGTGGTCAGAGGTGTACTGCGGTCAAAGTAGTCCTTGTGATGGAATCAGTTGCAGATATTATTGTAGAGAAGGTGAATGCCAAAATTGCAAAGATGACTGTTGGCCCACCAGAAGAAAACTGTGAGATCACCCCGGTTGTCACAGAATCCTCTGCAAATTTCATTGAGGGTCTTGTTATGGATTCCAAGCAAAAAGGAGCCAAACTCTGCCAGGAGTACAAGAGAGAGGGTAACCTTATATGGCCTCTTTTGGTAGACCACGTGAGGCCTGACATGAGACTTGCTTGGGAAGAGCCATTTGGGCCAGTCTTGCCCGTCATTAGGATCAACTCTGTTGAAGAAGGCATTCATCATTGCAATGCCAGCAATTTTGGACTCCAGGGATGTATATTCACAAAAGACATCAACAAAGCAATCATGATAAGTGATGCCATGGAAACTGGAACAGTTCAAATTAACTCCGCACCTGCCCGGGGACCGGATCATTTTCCTTTCCAGGGTCTGAGAGACAGTGGCATTGGTTCTCAGGGAATCACAAATAGCATTCTCATGATGACGAAAGTCAAGAGCACTGTCATCAACTTGCCTACTCCTTCGTTTACAATGGGTTGA___TCTGAGTATTTAGATTTATAATATAAGATGTCTTAGGATTTTGCTGTATGATGAGTGAGAAAGCTGTTATTTTCCTTGCTTTTGAGTGTTAGAAAGGAATGGGTTTCCATATGATTTATTAAAACGCTGGTATGGAACAGCGTATAGCCCTGATTAATAATATGCCCTTCTAATTATTATTAATAAATTCTTCTAGTCAAAATCAATTCTATTAGCGATGGAATTTAGAAAAGAATATAAGAATTCTAATGCACAAATTTCCCCCTTCTAAACGAATTTGGAAAACACGTTTATTTGAACCTGTGAACTTTCTATGCCCCTCACAACTTGGGACATGTTTGTGACTCAATATCGGGTTCCAGAGAATTTATCTTTCAATTGGTGAACAATCTACTTTTTCAATTTGTCAAGAATCTGCTTTTT

Fln Alignment:

sp_v1.1_unigene19030___MVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGIGCISFTGGDTGIAISKKAGMIPLQMELGGKXXXXXXXXXXXXXXXXNVVKGGFSYSGQRCTAVKVVLVMESVADIIVEKVNAKIAKMTVGPPEENCEITPVVTESSANFIEGLVMDSKQKGAKLCQEYKREGNLIWPLLVDHVRPDMRLAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCIFTKDINKAIMISDAMETGTVQINSAPARGPDHFPFQGLRDSGIGSQGITNSILMMTKVKSTVINLPTPSFTMG
A9P2J6_______________MVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGIGCITFTGGDTGIAISKKAGMIPLQMELGGKDACIILDDADLDLAAANVVKGGFSYSGQRCTAVKVVLVMESVADTIVEKVNAKVAKMTVGPPEENCEITPVVTESSANFIEGLVMDAKQKGAKLCQEYKREGNLIWPLLVDHVRPDMRLAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCIFTKDINKAIMISDAMETGTVQINSAPARGPDHFPFQGLRDSGIGSQGITNSILMMTKVKSTVINLPTPSFTMG

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
200	33		66		0.997452
535			94	5	0.998744
539	91		5		0.995208
611	46			53	1.0
821		14		85	0.993533
1981		33		66	1.0
2025		14		85	0.993533
2031	20	80			0.995493
2034		20	80		0.995493
2037	25			75	0.996473
2039	25			75	0.996473
2040	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain