SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19026

Length: 1323 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19026

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9T7Z0_RICCO	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	22%
Blast2go	pentatricopeptide repeat-containing	-	-	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	0.0	59%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAH0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 78 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 364 - 486

Fln protein: MLGIVNLCNMRRTPSSSLLRISKFSNVLLMRSSISTSVSGINNSFELFSTSSINTSFSLSFTSSIKSKSARQNNVLHREVFERPIRQSPTSVDSPSAQLTDFNHRKVAEAPINKSSPLASCHITAAHAAPQGPTCREMKFENWTQKLQRGFQPEDVVKVLKEQRDVDLCYDIFRWASQQRRYKHNHLTYYVMIQKLAAETRLDKVEILVSELLAGACDGSESLFNTVIYIYIQARNLGKALNVYRHMRKTSDCKPSLRTYNTLLSALVDKCTNSYVSQVYMQNTQALFEQMLAANVAPDIFTLNTMIKGYSRSLHLDDALRIFHQMEFYCCKPNTHSFNYLIRGLCLQNMTGECHGYLPGYDR*

Protein Length: 365

Fln nts: AACTTCCCCCTCATGTGGCCTATATCGTTGTGCCCTTCGTCTGTCTTTCAATTTTTTTTCAACCTTCCCTTTCATGTGACCTATATCGTCGCGCGATCATGCGATCTATCAGCTCTATTGGTGCAGTATTATCCCACAGTGCCCATTTTCATCATGTAGTTGGACACCCGAAAAATTCCTATTTCTTGGATAGTAGAATAAAACCCGACAACAGCAGCCAGCGGCAGT_-_ATGTTAGGCATCGTGAATCTCTGCAACATGAGAAGAACTCCGTCTTCTTCATTATTACGCATCAGTAAGTTTTCTAATGTCTTGTTAATGCGCTCCTCAATATCAACATCAGTTTCAGGAATCAATAATTCATTTGAATTGTTCAGCACTAGCTCGATAAATACATCATTTTCATTGTCTTTCACTTCTTCAATCAAATCCAAATCTGCTCGTCAGAACAATGTCTTACACAGAGAAGTTTTTGAACGGCCCATTAGACAATCACCTACTTCTGTCGATTCCCCATCTGCCCAACTCACTGATTTCAATCACAGAAAAGTTGCTGAAGCACCCATTAACAAATCAAGCCCTTTGGCCAGCTGCCATATTACAGCTGCCCATGCTGCTCCTCAGGGACCCACCTGTAGAGAAATGAAGTTTGAAAACTGGACACAGAAATTACAGAGAGGGTTTCAGCCAGAAGACGTTGTAAAAGTGTTGAAAGAACAGAGAGATGTTGACCTATGTTACGATATTTTCCGGTGGGCTTCTCAGCAGAGAAGGTACAAACACAACCATCTGACTTACTATGTTATGATCCAGAAATTGGCCGCTGAAACGAGGTTGGATAAAGTGGAGATCCTGGTTAGTGAATTATTGGCTGGAGCTTGTGATGGCAGTGAATCCCTTTTTAACACAGTGATATATATTTATATTCAGGCTCGCAATTTGGGGAAGGCATTAAATGTGTACAGGCACATGCGCAAGACATCTGATTGTAAACCTTCTTTGAGGACATACAATACATTACTAAGTGCTCTTGTAGATAAATGCACAAATTCGTATGTCAGCCAAGTGTACATGCAGAACACTCAAGCTTTGTTCGAACAGATGTTAGCTGCCAATGTTGCTCCAGATATTTTCACCCTCAACACAATGATCAAAGGCTACTCAAGGTCCTTGCACCTGGATGATGCTCTCAGAATTTTTCATCAGATGGAATTTTATTGTTGCAAACCCAATACACACAGTTTCAACTATTTGATCAGAGGACTATGTTTGCAGAATATGACGGGAGAATGCCATGGTTATTTACCAGGATATGATCGGTAGAGG

Fln Alignment:

sp_v1.1_unigene19026___QKLQRGFQP-----EDVVKVLKEQRDVDLCYDIFRWASQQRRYKHNHLTYYVMIQKLAAETRLDKVEILVSELLAGACDGSESLFNTVIYIYIQARNLGKALNVYRHMRKTSDCKPSLRTYNTLLSALVDKCTNSYVSQVYMQNTQALFEQMLAANVAPDIFTLNTMIKGYSRSLHLDDALRIFHQMEFYCCKPNTHSFNYLIRGLCLQNMTGECHGYL
D5AAH0_______________QMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFK-KLHEFGISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYV-PDALTYNTLLNSLCRKMN--------LREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFV

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
116			88	11	0.923564
117		88	11		0.923564
118			11	88	0.923564
119		88	11		0.923564
120			11	88	0.923564
208	33	66			1.0
400	80			20	0.995493
401	25			75	0.996473
406	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain