SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18995

Length: 1815 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18995

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NFA1503; nucleosome assembly protein family; K11290 template-activating factor I	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	nucleosome chromatin assembly factor group	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	cell differentiation	GO:0030154	Biological Process	84%
Blast2go	cell proliferation	GO:0008283	Biological Process	84%
Blast2go	nucleosome assembly	GO:0006334	Biological Process	84%
Blast2go	lateral root formation	GO:0010311	Biological Process	84%
Blast2go	DNA binding	GO:0003677	Molecular Function	84%
Blast2go	histone binding	GO:0042393	Molecular Function	84%
Blast2go	chromatin binding	GO:0003682	Molecular Function	84%
Blast2go	cytoplasm	GO:0005737	Cellular Component	84%
Blast2go	nucleus	GO:0005634	Cellular Component	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK77

Fln msg:

Fln protein: MDKSKRSKGEEEEHIDGELVLSIEKLQEIQDELERVNEEASDKVLEVEQKYNEIRRPVYTKRNEIIQTIPDFWLTAFLSHPALSDLLTEEDQKVFKYLQSLDVEDFKDVKSGYSITFTFRPNPYFEETKLVKVFSFCDDGSTKIAGTTLKWKDGMDVTNGISPEKEGNKRSYQEESFFTWFSETQKDTPDGIHDEVAEIIKEDLWPNPLKYFNNEADEEYEDGEDEDDDGEDEDPGKSTDGVDEDEEDQDDDEDEEC*

Protein Length: 259

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGTTGATGCAATGAATATAATATCTTACGTCGTGACCTTGGCTGTCATTCGGATCATAAGAATAGAGTAGCGACGAGCGGAAGAGAGTCGTAGGGTATTTTTGTCTTTTCTCAAAATTTTAAGAGACTTTGAGAAACTGTTTAAAGCCAGGGGTTAAGCGGGATCAGGGTTTAAGGGCTTGTGGATGATGACCTTGGCACAGTAGGAGGAAGAGGCAACTCAGTTCACATATCCCATTCCCTCTCCGCCACTCTGCCTGTGCCTTCGACTCTGTTGGATTTTTAGGACTTTTGGGTCAGAAGGACTGGGCAGG_-_ATGGACAAGTCCAAGAGATCAAAAGGGGAAGAGGAAGAGCACATAGACGGCGAGCTTGTTCTCTCCATTGAAAAGCTGCAGGAAATCCAGGACGAGCTTGAAAGGGTCAATGAAGAAGCTAGTGACAAAGTACTAGAGGTGGAGCAAAAATATAATGAGATACGGCGTCCAGTCTATACGAAACGCAATGAAATCATTCAGACAATTCCAGATTTTTGGCTTACTGCTTTTCTAAGCCACCCTGCATTGTCCGACCTCCTGACTGAAGAAGATCAGAAGGTTTTCAAGTATTTGCAATCTCTTGATGTTGAGGATTTCAAAGATGTCAAGTCAGGATATTCCATTACGTTTACATTTCGTCCTAACCCTTATTTTGAAGAGACAAAGCTGGTTAAAGTGTTCTCATTCTGTGATGATGGAAGCACAAAAATAGCGGGCACCACTCTAAAGTGGAAAGATGGAATGGATGTGACCAATGGGATTAGTCCAGAGAAGGAAGGAAACAAGCGATCTTATCAAGAAGAAAGTTTCTTCACTTGGTTTAGCGAAACCCAGAAGGATACTCCAGATGGAATACACGATGAGGTGGCTGAAATAATTAAAGAAGATCTGTGGCCAAATCCCCTAAAGTACTTCAACAATGAAGCTGATGAAGAGTACGAGGATGGGGAAGACGAAGACGATGATGGAGAAGATGAAGATCCTGGAAAAAGCACAGATGGCGTTGACGAGGATGAAGAAGATCAAGACGATGACGAGGATGAGGAATGCTGA___GAAGCTGCGGTCTGGCTTTAATTTTGAACTGGTGCTTATTGTCGAAAGAAGGTGCAAGTGACTCAGAGTGGTCCCCGGTTTCACTGGTGTAGCTACAGTTGTAAAATTTTATTTTTCATACAAGGGTGTAGCGATTGACGCGAAGCTGAGAAAGTACTTATCTGAATTCCCTAAATTATAGGTGGACTGTACATTTATTTGACCAGAGGTTAGAACTGCCTCAAATTAAACCTACATTTGCTATGTAGTGTTATTAAATTAAGAGGCATGGGAGTAAGCTTATGTAGGATATTTTAGTTGCATTTCTACAACACTGAAACTTCTTGAAGTTATCCCTAGTTTTTACTGGTAGTGTCCATGTTATATAGATATTACAGGTTAAACTGTGTCGGATTTGCTGGGATTTAGTTTTATAATGCAACAGATATACATTGCTGTTTTTTTGCTGGGATCCTGAGCATAATAGATCCCCTGCAGTGATAGAAGCCGCCTTCTGTAATCTTTTCTTCTTTGCCTTTTTTAGTTATGGCATAGAGTGAAATTCGATTTGAAAGATTAAGGTCTATAAAGGACTCGATAGGTTTTTCAAGTCAAAGTGACTACTAGGTTTATATATACTGAGAATTAATTAGTTTGTTGCAATAATGGTCGCTTCATTATAACTTAATTATTATTTTTCCTATAATGCTTCTGAAGAGTTTAC

Fln Alignment:

sp_v1.1_unigene18995___MDKSKRSKGEEEEHIDGELVLSIEKLQEIQDELERVNEEASDKVLEVEQKYNEIRRPVYTKRNEIIQTIPDFWLTAFLSHPALSDLLTEEDQKVFKYLQSLDVEDFKDVKSGYSITFTFRPNPYFEETKLVKVFSFCDDGSTKIAGTTLKWKDGMDVTNGISPEKEGNKRSYQEESFFTWFSETQKDTPDGIHDEVAEIIKEDLWPNPLKYFNNXXXXXXXXXXXXXXXXXXXXPGKSTDGV
A9NK77_______________MDKSKRSKGEEEEHIDGELVLSIEKLQEIQDELERVNEEASDKVLEVEQKYNEIRRPVYTKRNEIIQTIPDFWLTAFLSHPALSDLLTEEDQKVFKYLQSLDVEDFKDVKSGYSITFTFRPNPYFDETKLVKVFSFCDDGSTKITGTTLKWKDGMDVTNGISPEKEGNKRSYQEESFFTWFSETQKDTPDGIHDEVAEIIKEDLWPNPLKYFNSEADEEYEDGEDEDDDGEDEDPGKSTDGV

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
54	33		66		0.997452
61			66	33	0.997452
62	66			33	0.997452
66		33		66	0.997452
68			66	33	0.997452
69	33	66			0.997452
74	66	33			0.997452
75	33	66			0.997452
119	66	33			0.997452
155			14	85	0.993533
157		14		85	0.993533
159	85			14	0.993533
162	85	14			0.993533
163	85	14			0.993533
164		85		14	0.993533
167		14		85	0.993533
169			14	85	0.993533
170	85			14	0.993533
171	85	14			0.993533
173		14	85		0.993533
174		85		14	0.993533
1257	93		6		0.999153
1259		6	93		0.999153
1263	93			6	0.999153
1265	93			6	0.999153
1266	93	6			0.999153
1268		9	90		1.0
1678	81			18	0.999994
1680		5	52		1.0
1739		20	80		1.0
1774	14			85	0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain