SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18985

Length: 831 nt

Origin of reads: Biogeco_1 Biogeco_2

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18985

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	50S ribosomal protein L18, putative; K02881 large subunit ribosomal protein L18	-	-	1.0e-29	60%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	63%
Blast2go	50s ribosomal protein l18	-	-	6.19074e-31	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	6.19074e-31	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	ribosome biogenesis	GO:0042254	Biological Process	6.19074e-31	79%
Blast2go	translation	GO:0006412	Biological Process	6.19074e-31	79%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	6.19074e-31	79%
Blast2go	ribosome	GO:0005840	Cellular Component	6.19074e-31	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	6.19074e-31	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein L18/L5	IPR005484	-	6.19074e-31	79%

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
88	14		85		0.993533
92	85		14		0.993533
93	85		14		0.993533
159	81		18		0.999994
160		81	18		0.999994
161			18	81	0.999994
219	88		11		0.923564
247		44	55		1.0
258	88		11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain