SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18980

Length: 2055 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene18980
ACGTCGTGACCTTGGCTGTCACTCAATTGTTACATTCATCCTTCGTCGGCGGTGGTGCCTACCATTGTGCCCAACGACCTGCTAAAACTAAAAAATGTTTAAACGGGCTTATATCCTCCGACGTGGCCGTGGAGAATTTCATTCAAAAGAAGAAATCGCATCATCTGTTTTTCACATAGTGAAACTGGTTTTCTCAAAGGCCAACACTGTATCAGGTGATTCAATGTTCTATTGAAACTGTTTTGGCTGATTTGTTTAAGCAACTTAGAAGAAATATCGAAGACTCTGTGGAGGAATGTATGCTCATTGCATCATTAAAGCAACTTATTATTAGAAATATTGAAGAATTTTTCAAAGGATTTGCGCTGATTGCATAGGAGCAGCAGAAAAAAGGATATATATATATATATATATATTTAATTAAACAAAGAAGAAGAAGATACCCTAGGATAATTGGGGCAGTCAGACTTGTTTTGGTACCTAATTTAATAAAGCTCGCAGTACAAGTACTTTGGTGTACCTAATTTAATAAAGCTCGCAGTACAAGTACTTTGTTAAAGCAAGGATATCTGGTACTTGGAGTATCCATAAAGGAAAATAATTGGTTCGATGGATCACCATGAGCGGGGTGAAGGAAAGGAGCATTTCTTCACTTCCACGCTGACTGGATCGTCTAATTCACAATCTTCAGCCAGTGGAAATCCTGCTATTTCTCGTAGTGGTTACAAGGCAGCCGAAGGTTCTGTCTCAAGGTTTGATTTTAGCTCGGATGATATTTTATCAAACTATGACTATAGCAAGAAGCAAAATTTCTCTGATGGGCACCATGTTGCACCTTCTCGAATGAGCAATTCCTCAACAGACGCCTATATGACAAGCAGCCGCTCTGACAGGTTTTGGGAGCCTAAAAGTATGAAGCAATTTTCAAATGAGCAGATGCAGGAAGATGATAACCTTTACAGTGAGGTTGTTGCAACCGTTGAACGGACTATGAAAAAGTATGCGGATAATCTGTTAAAAGTCTTGGATGGTATGACTGGACGGTTAGCTCAACTAGAGTTAGTGAATCAAAGGCTTGAACGCTCAGTAGAAGAAATGCGGGCTGATGTGGCTCACAACCACAGTGAAGCAGATGAAAGGTTTAGGTTATTGGACAACCATATCCAAGAAGTTCACAGGGCAGTACAAGTTCTGCGCGATAAGCAGGAGATTACAGAGGCACAGACAGAATTAGTGAAGCTTCAGCTTGTACAGAAAGAATCATCCAACAACTTGCATGGTTCAGAAGATAAATCTCGTGCATCTAGTTCTCTATCTGAGGGAAAACAGGAACACACTTTTCAACCTCCAAGTATTCAGTCACAGCTTCGAACTTCGCTTCCTGCTCTGCCTGCTCTACCCTCACCTCAGCAACTGACCACCCCCCATCCTCCTCTGCCAAATTCTGATCAGTGTCAGACTCCACCACAGCAGCAGCTACCTGCTCAAGCAAATATGGCGCAGCAGTCTCTGGTTACGTCCTTACCACAGCAGCAAGTAGGACAACTCCAACAGCAACCTAATGTAATGCCGATGCAGTCATACTATCAACAGTCACCACAACAGCAGGGGCAGATCCATCAGTCTCCTAATGCTCCACAGGCTACTACTCAGTTGCCACATATTCAGCAGTCTCTACAGCTGCCGCCACAACAAGCTCAGCATCTACCATATATGAATCAAGCACCACATATTCATAACATTCCAAACCAAAGTGTACAACCACAGGTTCAACGGTCACAAGGGCAACAATTGCCACAGCAACAAACACAAATGCAACCACAGCCTCTTTCTCAACAGCCACATTTTCAACAACAGGCTCAGTTGCGCCCGAATATTTATCAAGGCCAAACTCATGGAGTTTCTCCTGAAGCATTTTCTTATACTCCTGCAACTCCACACCGACAGACACAGCTGTCTTATCAGGGGGTCACTTCTGGTATTCCATCTGAACCTTCGATATATAATTATGGAAACCCTACTCAGACTATCCCGCCCTTCGCAGTGAGTGACAGG

Ace file of the UniGene sp_v1.1_unigene18980

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to hydroxyproline-rich glycoprotein family protein n=1 Tax=Vitis vinifera RepID=UPI0001984339	-	-	3.0e-39	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	hydroxyproline-rich glycoprotein family protein	-	-	5.97797e-39	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF1421	IPR010820	-	5.97797e-39	59%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A892

Fln msg: Distance to subject end: 71 aas, your sequence is shorter than subject: 482 - 534

Fln protein: MDHHERGEGKEHFFTSTLTGSSNSQSSASGNPAISRSGYKAAEGSVSRFDFSSDDILSNYDYSKKQNFSDGHHVAPSRMSNSSTDAYMTSSRSDRFWEPKSMKQFSNEQMQEDDNLYSEVVATVERTMKKYADNLLKVLDGMTGRLAQLELVNQRLERSVEEMRADVAHNHSEADERFRLLDNHIQEVHRAVQVLRDKQEITEAQTELVKLQLVQKESSNNLHGSEDKSRASSSLSEGKQEHTFQPPSIQSQLRTSLPALPALPSPQQLTTPHPPLPNSDQCQTPPQQQLPAQANMAQQSLVTSLPQQQVGQLQQQPNVMPMQSYYQQSPQQQGQIHQSPNAPQATTQLPHIQQSLQLPPQQAQHLPYMNQAPHIHNIPNQSVQPQVQRSQGQQLPQQQTQMQPQPLSQQPHFQQQAQLRPNIYQGQTHGVSPEAFSYTPATPHRQTQLSYQGVTSGIPSEPSIYNYGNPTQTIPPFAVSDR

Protein Length: 483

Fln nts: ACGTCGTGACCTTGGCTGTCACTCAATTGTTACATTCATCCTTCGTCGGCGGTGGTGCCTACCATTGTGCCCAACGACCTGCTAAAACTAAAAAATGTTTAAACGGGCTTATATCCTCCGACGTGGCCGTGGAGAATTTCATTCAAAAGAAGAAATCGCATCATCTGTTTTTCACATAGTGAAACTGGTTTTCTCAAAGGCCAACACTGTATCAGGTGATTCAATGTTCTATTGAAACTGTTTTGGCTGATTTGTTTAAGCAACTTAGAAGAAATATCGAAGACTCTGTGGAGGAATGTATGCTCATTGCATCATTAAAGCAACTTATTATTAGAAATATTGAAGAATTTTTCAAAGGATTTGCGCTGATTGCATAGGAGCAGCAGAAAAAAGGATATATATATATATATATATATTTAATTAAACAAAGAAGAAGAAGATACCCTAGGATAATTGGGGCAGTCAGACTTGTTTTGGTACCTAATTTAATAAAGCTCGCAGTACAAGTACTTTGGTGTACCTAATTTAATAAAGCTCGCAGTACAAGTACTTTGTTAAAGCAAGGATATCTGGTACTTGGAGTATCCATAAAGGAAAATAATTGGTTCG_-_ATGGATCACCATGAGCGGGGTGAAGGAAAGGAGCATTTCTTCACTTCCACGCTGACTGGATCGTCTAATTCACAATCTTCAGCCAGTGGAAATCCTGCTATTTCTCGTAGTGGTTACAAGGCAGCCGAAGGTTCTGTCTCAAGGTTTGATTTTAGCTCGGATGATATTTTATCAAACTATGACTATAGCAAGAAGCAAAATTTCTCTGATGGGCACCATGTTGCACCTTCTCGAATGAGCAATTCCTCAACAGACGCCTATATGACAAGCAGCCGCTCTGACAGGTTTTGGGAGCCTAAAAGTATGAAGCAATTTTCAAATGAGCAGATGCAGGAAGATGATAACCTTTACAGTGAGGTTGTTGCAACCGTTGAACGGACTATGAAAAAGTATGCGGATAATCTGTTAAAAGTCTTGGATGGTATGACTGGACGGTTAGCTCAACTAGAGTTAGTGAATCAAAGGCTTGAACGCTCAGTAGAAGAAATGCGGGCTGATGTGGCTCACAACCACAGTGAAGCAGATGAAAGGTTTAGGTTATTGGACAACCATATCCAAGAAGTTCACAGGGCAGTACAAGTTCTGCGCGATAAGCAGGAGATTACAGAGGCACAGACAGAATTAGTGAAGCTTCAGCTTGTACAGAAAGAATCATCCAACAACTTGCATGGTTCAGAAGATAAATCTCGTGCATCTAGTTCTCTATCTGAGGGAAAACAGGAACACACTTTTCAACCTCCAAGTATTCAGTCACAGCTTCGAACTTCGCTTCCTGCTCTGCCTGCTCTACCCTCACCTCAGCAACTGACCACCCCCCATCCTCCTCTGCCAAATTCTGATCAGTGTCAGACTCCACCACAGCAGCAGCTACCTGCTCAAGCAAATATGGCGCAGCAGTCTCTGGTTACGTCCTTACCACAGCAGCAAGTAGGACAACTCCAACAGCAACCTAATGTAATGCCGATGCAGTCATACTATCAACAGTCACCACAACAGCAGGGGCAGATCCATCAGTCTCCTAATGCTCCACAGGCTACTACTCAGTTGCCACATATTCAGCAGTCTCTACAGCTGCCGCCACAACAAGCTCAGCATCTACCATATATGAATCAAGCACCACATATTCATAACATTCCAAACCAAAGTGTACAACCACAGGTTCAACGGTCACAAGGGCAACAATTGCCACAGCAACAAACACAAATGCAACCACAGCCTCTTTCTCAACAGCCACATTTTCAACAACAGGCTCAGTTGCGCCCGAATATTTATCAAGGCCAAACTCATGGAGTTTCTCCTGAAGCATTTTCTTATACTCCTGCAACTCCACACCGACAGACACAGCTGTCTTATCAGGGGGTCACTTCTGGTATTCCATCTGAACCTTCGATATATAATTATGGAAACCCTACTCAGACTATCCCGCCCTTCGCAGTGAGTGACAGG

Fln Alignment:

sp_v1.1_unigene18980___NYDYSKKQNFSDGHHVAPSRMSNSSTDA---YMTSSRSDRFWEPKSMKQFSNEQMQEDDNLYSEVVATVERTMKKYADNLLKVLDGMTGRLAQLELVNQRLERSVEEMRADVAHNHSEADERFRLLDNHIQEVHRAVQVLRDKQEITEAQTELVKLQLVQKESS
D5A892_______________NFDIVPSYDFQPIHPKVAEDIPHITTPMSVYYSKGYSSGEHTEPAKARQENNREPYD-----IVTVEAVERIMKQYIDNLLHALEGISRRLSHLESTTRHLETSLGELKMTVDNNHGATDGKLRLLENHTREVQTGVQILRDKQEIAEAHSQLMKLQLSKSNSS

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
172	12			87	0.992554
174		87	12		0.992554
175	87		12		0.992554
176		87	12		0.992554
395	66			33	0.997452
396	33		66		0.997452
397			66	33	0.997452
418	66			33	0.997452
421	33			66	0.997452
503		83		16	0.994512
504	83	16			0.994512
509	83			16	0.994512
510	83			16	0.994512
513	83			16	0.994512
515	16			83	0.994512
516		16		83	0.994512
518		16	83		0.994512
519	16		83		0.994512
699	25		75		1.0
1014	33		66		1.0
1047		20	80		0.995493
1051	80		20		0.995493
1055		80	20		0.995493
1056	80			20	0.995493
1060	80	20			0.995493
1412		90		9	0.999872
1413	85		9		0.999726
1416	85		4	9	0.999726
1417	90		10		0.999898
1420		10	90		0.999898

SSRs (tot: 2)

Start position	End position	Sequence	Length
395	416	AT AT AT AT AT AT AT AT AT AT AT	22
428	440	AAG AAG AAG AAG A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain