SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18970

Length: 2422 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene18970
ATGGGGCGTCGTGACCTTGGCTGTCACTCAATTCTTACTTTACCCTCGAGAAAAGCCCATAGGCAGCACCGTAAGGAAATGGTGACAACACAGGCCACCGTCCGTCTTGGTTGGCAAATCTAGTGTACCAATGTAGCTGTCCGGAAGCTTAATACAGTATTAATAATCAGAACAATCTTATGCTCTCCTTCCTCGGCACAGATCCTACAAATATATCGCTCACATATATTTCATGCGGTGGCGAGTCCATGAGGACCAGAATGCTAGGGCATCATCTGCCACAGACAGATATGACCCAACGAACAATTCTCTATCTAATTATCGTTGATCCCTAAATTTCAAAGTTTCAGAAGATCAGATCATTCCGAACTTCAATTAAATCACTATACAATGGCGGGTGCGGCCTCGTCCTTGTTTTTCTTAGACATGAAAGGCCGAGTACTGGTGTGGAGGGACTACCGTGGCGACGTTTCTTCATCTGATGCCGAACGATTCTTCTCCAAACTCATCGAAAAAGAGAGCGATCCTGCATCTCACGATCCGGTGGTTCACGACAATGGAATTACTTACATGTTCATTCAACATAACAATGTTTATTTGATGATTGCTTCAAGACAAAATTGCAATGCGGCCAGCCTACTGCTCTTTCTTCACCGGGTCGTGGACGTGTTCAAGCACTATTTTGAGGAGCTGGAAGAAGAGTCTCTGAGAGATAACTTTGTCGTCGTGTATGAATTATTAGATGAGATGATGGATTTTGGCTACCCTCAATATACTGAAGCTAAGATCCTTAGCGAATTTATCAAAACTGATGCTTATAGAATGGAAGTCACACAACGGCCACCAATGGCAGTTACAAATGCAGTTTCATGGAGAAGTGAAGGGATACGATACAAAAAAAATGAAGTATTCTTGGATGTGGTGGAGAATGTTAATATTCTTGTGAATAGCAATGGGCAAATTGTTCGATCTGATGTAGTTGGTGCATTGAAGATGCGCACTTACTTGAGTGGAATGCCAGAGTGCAAGCTTGGTCTCAATGACAGGGTACTCCTAGAAGCTCAAGGTCGATCAACAAAGGGGAAAGCGATTGATCTGGATGATATAAAGTTCCATCAGTGTGTTCGTCTGGCTCGCTTCGAAAATGACAGGACTATATCGTTCATACCTCCTGATGGTTCTTTTGATTTAATGACATACAGGCTTAGCACTCAGGTAAAGCCTTTGATATGGGTTGAAGCTCAAGTAGAACGGCATTCAAGAAGCCGTGTAGAATTCACTGTGAAGGCTCGCAGTCAATTTAAGGAGCGAAGTACAGCAACAAATGTTGAAATTGAACTTCCAGTACCCTCTGATGCAACCACACCCAATGTGAGGACATCCATGGGTTCTTCTGTCTATGCACCAGAGAAGGAGGCATTGCTTTGGAAAATTAAGTCCTTTCCAGGTGGTAAGGAGTACATGTTGAGGGCCCAATTTAGTCTTCCTAGCATATCTGCTGAAGAATCAATGCCTGAAAAGCGGGCCCCTATTCGGGTCAAGTTTGAGATACCATACTTCACTGTCTCTGGAATTCAGGTTCGATACCTCAAAATCATTGAAAAGAGTGGGTACCAAGCGTTGCCTTGGGTTAGATACATCACAATGGCAGGTGAATATGAACTAAGGATGATTTAGACTTGGATATTTGTTGGTACAGTCTTCACAGGAGATATTGGTTTTCTACAGTCTCAATTTCTGCCGGTTGTGGCCTTTTAGCACAACCAAGTGAGGGATAAAAGAGTAACTGGAAGTTATCAGGTTATTCTTTCAGCAGGTGTTCTTAAAATTTCTAACAAGCTTGGGGGAGTGTTCTGACAAAAACCTGAAGTTTTGCACAGTTCTTTTTTAATTTGATTTTGCCTCCAGAATCTTTGTTTGTAGAAATCATTTATTGAGTGAGCAGAACATCAAGGTTTCATGTAACTTTACATCCACTATACAAATAACAGCTTTACAATAATACTTAGTGGATATGAACCTGGCATTTGGATATGACAAATGAACTGTATAAGCTTGAATTTGTATTTGTATTAGCTATTTTTTCCAAAGGTGACTATTAATTCCACCAAGAAACAGCATACATTTAAATTATCTCGAGTTCTGCTGGGTCAAGTAAACCTAGCAGGATCTCCTACCTGTATGTGAGGATAAAACTTTTGCATATAATCACATCTGTGATCACTGGAGCATCACGATGACAGTGCATAATTGCATTACTGACTGTCATGCCCTCCTCTAGATGGTATACACTTTTTAACTATCCTGTACAGCTGAACAAACTTACCTCATTTACTTGCCACTGTATTAAGGAACCATAAGACTGCACACATATGTGATAGCAGTGCATGCTTAAAATCAATAGATTCGCAATAGGTCTTTG

Ace file of the UniGene sp_v1.1_unigene18970

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Clathrin adaptor medium chain protein MU1B, putative n=7 Tax=rosids RepID=O22715_ARATH	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	clathrin adaptor complexes medium subunit family protein	-	-	95%

Source	GOs	Term	Type	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	95%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	95%
Blast2go	protein binding	GO:0005515	Molecular Function	95%
Blast2go	clathrin vesicle coat	GO:0030125	Cellular Component	95%
Blast2go	clathrin adaptor complex	GO:0030131	Cellular Component	95%

Source	InterPros	Term	Type	Identity
Blast2go	Clathrin adaptor, mu subunit	IPR001392	-	95%
Blast2go	Clathrin adaptor, mu subunit, C-terminal	IPR008968	-	95%
Blast2go	Longin-like	IPR011012	-	95%
Blast2go	Clathrin adaptor, mu subunit, conserved site	IPR018240	-	95%
Blast2go	AP complex, mu/sigma subunit	IPR022775	-	95%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRZ0

Fln msg:

Fln protein: MAGAASSLFFLDMKGRVLVWRDYRGDVSSSDAERFFSKLIEKESDPASHDPVVHDNGITYMFIQHNNVYLMIASRQNCNAASLLLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVENVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQVERHSRSRVEFTVKARSQFKERSTATNVEIELPVPSDATTPNVRTSMGSSVYAPEKEALLWKIKSFPGGKEYMLRAQFSLPSISAEESMPEKRAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRMI*

Protein Length: 430

Fln nts: ATGGGGCGTCGTGACCTTGGCTGTCACTCAATTCTTACTTTACCCTCGAGAAAAGCCCATAGGCAGCACCGTAAGGAAATGGTGACAACACAGGCCACCGTCCGTCTTGGTTGGCAAATCTAGTGTACCAATGTAGCTGTCCGGAAGCTTAATACAGTATTAATAATCAGAACAATCTTATGCTCTCCTTCCTCGGCACAGATCCTACAAATATATCGCTCACATATATTTCATGCGGTGGCGAGTCCATGAGGACCAGAATGCTAGGGCATCATCTGCCACAGACAGATATGACCCAACGAACAATTCTCTATCTAATTATCGTTGATCCCTAAATTTCAAAGTTTCAGAAGATCAGATCATTCCGAACTTCAATTAAATCACTATACA_-_ATGGCGGGTGCGGCCTCGTCCTTGTTTTTCTTAGACATGAAAGGCCGAGTACTGGTGTGGAGGGACTACCGTGGCGACGTTTCTTCATCTGATGCCGAACGATTCTTCTCCAAACTCATCGAAAAAGAGAGCGATCCTGCATCTCACGATCCGGTGGTTCACGACAATGGAATTACTTACATGTTCATTCAACATAACAATGTTTATTTGATGATTGCTTCAAGACAAAATTGCAATGCGGCCAGCCTACTGCTCTTTCTTCACCGGGTCGTGGACGTGTTCAAGCACTATTTTGAGGAGCTGGAAGAAGAGTCTCTGAGAGATAACTTTGTCGTCGTGTATGAATTATTAGATGAGATGATGGATTTTGGCTACCCTCAATATACTGAAGCTAAGATCCTTAGCGAATTTATCAAAACTGATGCTTATAGAATGGAAGTCACACAACGGCCACCAATGGCAGTTACAAATGCAGTTTCATGGAGAAGTGAAGGGATACGATACAAAAAAAATGAAGTATTCTTGGATGTGGTGGAGAATGTTAATATTCTTGTGAATAGCAATGGGCAAATTGTTCGATCTGATGTAGTTGGTGCATTGAAGATGCGCACTTACTTGAGTGGAATGCCAGAGTGCAAGCTTGGTCTCAATGACAGGGTACTCCTAGAAGCTCAAGGTCGATCAACAAAGGGGAAAGCGATTGATCTGGATGATATAAAGTTCCATCAGTGTGTTCGTCTGGCTCGCTTCGAAAATGACAGGACTATATCGTTCATACCTCCTGATGGTTCTTTTGATTTAATGACATACAGGCTTAGCACTCAGGTAAAGCCTTTGATATGGGTTGAAGCTCAAGTAGAACGGCATTCAAGAAGCCGTGTAGAATTCACTGTGAAGGCTCGCAGTCAATTTAAGGAGCGAAGTACAGCAACAAATGTTGAAATTGAACTTCCAGTACCCTCTGATGCAACCACACCCAATGTGAGGACATCCATGGGTTCTTCTGTCTATGCACCAGAGAAGGAGGCATTGCTTTGGAAAATTAAGTCCTTTCCAGGTGGTAAGGAGTACATGTTGAGGGCCCAATTTAGTCTTCCTAGCATATCTGCTGAAGAATCAATGCCTGAAAAGCGGGCCCCTATTCGGGTCAAGTTTGAGATACCATACTTCACTGTCTCTGGAATTCAGGTTCGATACCTCAAAATCATTGAAAAGAGTGGGTACCAAGCGTTGCCTTGGGTTAGATACATCACAATGGCAGGTGAATATGAACTAAGGATGATTTAG___ACTTGGATATTTGTTGGTACAGTCTTCACAGGAGATATTGGTTTTCTACAGTCTCAATTTCTGCCGGTTGTGGCCTTTTAGCACAACCAAGTGAGGGATAAAAGAGTAACTGGAAGTTATCAGGTTATTCTTTCAGCAGGTGTTCTTAAAATTTCTAACAAGCTTGGGGGAGTGTTCTGACAAAAACCTGAAGTTTTGCACAGTTCTTTTTTAATTTGATTTTGCCTCCAGAATCTTTGTTTGTAGAAATCATTTATTGAGTGAGCAGAACATCAAGGTTTCATGTAACTTTACATCCACTATACAAATAACAGCTTTACAATAATACTTAGTGGATATGAACCTGGCATTTGGATATGACAAATGAACTGTATAAGCTTGAATTTGTATTTGTATTAGCTATTTTTTCCAAAGGTGACTATTAATTCCACCAAGAAACAGCATACATTTAAATTATCTCGAGTTCTGCTGGGTCAAGTAAACCTAGCAGGATCTCCTACCTGTATGTGAGGATAAAACTTTTGCATATAATCACATCTGTGATCACTGGAGCATCACGATGACAGTGCATAATTGCATTACTGACTGTCATGCCCTCCTCTAGATGGTATACACTTTTTAACTATCCTGTACAGCTGAACAAACTTACCTCATTTACTTGCCACTGTATTAAGGAACCATAAGACTGCACACATATGTGATAGCAGTGCATGCTTAAAATCAATAGATTCGCAATAGGTCTTTG

Fln Alignment:

sp_v1.1_unigene18970___MAGAASSLFFLDMKGRVLVWRDYRGDVSSSDAERFFSKLIEKESDPASHDPVVHDNGITYMFIQHNNVYLMIASRQNCNAASLLLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVENVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQVERHSRSRVEFTVKARSQFKERSTATNVEIELPVPSDATTPNVRTSMGSSVYAPEKEALLWKIKSFPGGKEYMLRAQFSLPSISAEESMPEKRAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRMI
B8LRZ0_______________MAGAASALFFLDLKGRVLVWRDYRGDVSSSQAERFFSKLIEKEGDPGSHDPVVHDSGITYMFIQHNNVYLMIASRQNCNAASLLLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVENVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFHQCVRLARFGNDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQVERHSRSRVEFTVKARSQFKERSTATNVEIELPVPADATTPIVRTSMGSSVYAPEKEALLWKIKSFPGGKEYMLRAQFSLPSISAEESIPEKRAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRMI

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
7	14	85			0.993533
8	14		85		0.993533
9	14			85	0.993533
11		14	85		0.993533
18	14			85	0.993533
19	14		85		0.993533
20	14		85		0.993533
21	14	85			0.993533
23	14		85		0.993533
25		85	14		0.993533
27	14	85			0.993533
28	14			85	0.993533
45		90	10		0.90298
49	90			10	0.90298
52	90	10			0.90298
53	90			10	0.90298
54	90			10	0.90298
56		90	10		0.90298
58		90		10	0.90298
59	90		10		0.90298
62		10	90		0.90298
63			90	10	0.90298
110			90	10	0.90298
364		16		83	0.994512
1992		38	61		1.0
2137		77		22	0.999999
2195	66		33		1.0
2232		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain