SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18962

Length: 702 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18962

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H4 n=1 Tax=Zea mays RepID=B6TJ90_MAIZE	-	-	5.0e-38	98%
FL-Next	sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	histone h4	-	-	3.78915e-38	100%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	3.78915e-38	100%
Blast2go	nucleosome assembly	GO:0006334	Biological Process	3.78915e-38	100%
Blast2go	cytoskeleton organization	GO:0007010	Biological Process	3.78915e-38	100%
Blast2go	DNA binding	GO:0003677	Molecular Function	3.78915e-38	100%
Blast2go	actin binding	GO:0003779	Molecular Function	3.78915e-38	100%
Blast2go	nucleolus	GO:0005730	Cellular Component	3.78915e-38	100%
Blast2go	vacuole	GO:0005773	Cellular Component	3.78915e-38	100%
Blast2go	nucleosome	GO:0000786	Cellular Component	3.78915e-38	100%
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.78915e-38	100%
Blast2go	chloroplast	GO:0009507	Cellular Component	3.78915e-38	100%
Blast2go	thylakoid	GO:0009579	Cellular Component	3.78915e-38	100%
Blast2go	actin cytoskeleton	GO:0015629	Cellular Component	3.78915e-38	100%
Blast2go	mitochondrion	GO:0005739	Cellular Component	3.78915e-38	100%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 31	IPR002659	-	3.78915e-38	100%

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
20	88	11			0.923564
21		22		77	0.999999
22			33	11	1.0
23			77	22	0.999999
24		22	77		0.999999
25	22	11	66		0.999999
27	88		11		0.923564
29		11		88	0.923564
59	50		50		1.0
226		80		20	1.0
247	53		46		1.0
382		55	44		1.0
402	50		50		1.0
428	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain