SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene18953

Length: 1134 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene18953

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	50S ribosomal protein L12, chloroplastic n=3 Tax=Spinacia oleracea RepID=RK12_SPIOL	-	-	9.0e-21	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	ribosomal protein l12	-	-	4.34245e-37	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	4.34245e-37	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	translation	GO:0006412	Biological Process	4.34245e-37	80%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	4.34245e-37	80%
Blast2go	RNA binding	GO:0003723	Molecular Function	4.34245e-37	80%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	4.34245e-37	80%
Blast2go	protein binding	GO:0005515	Molecular Function	4.34245e-37	80%
Blast2go	nucleoid	GO:0009295	Cellular Component	4.34245e-37	80%
Blast2go	plastid large ribosomal subunit	GO:0000311	Cellular Component	4.34245e-37	80%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	4.34245e-37	80%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	4.34245e-37	80%

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
324		66		33	0.997452
326		66	33		0.997452
327			33	66	0.997452
373		25		75	0.996473
412	75			25	0.996473
413	75	25			0.996473
435		50		50	1.0
496		40		60	1.0
598		85	14		0.993533
616		14		85	0.993533
635		85		14	0.993533
637	59		40		1.0
655	63		36		1.0
679		20	77		1.0
684	5	2		91	0.995912
685	5	94			0.998894
688	5	2		91	0.995912
689	5			94	0.998894
692		85	14		1.0
705			3	89	0.998606
726		7	92		0.999602
732		19	80		1.0
742	57	42			1.0
763	47	52			1.0
782		50		50	1.0
783			45	36	1.0
795	28			71	1.0
913		25		75	0.996473
990		33	66		1.0
1073			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain